Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 seq668 82.4 9e-11 seq7 82.4 9e-11 seq2 82.4 9e-11 >seq4 Length=215701946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| ||||||||||| ||||| || || || || | |||||||| || Sbjct 1232184 AAACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 1232127 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | || |||| | ||| | || || || ||||| |||||||| || || || Sbjct 1232126 CCTCCAAGTCCTGCACCTCTCTGCCTTCCTACAGCATCAATCTCATCGATAAACACAATG 1232067 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || ||||| | ||| | ||||| || || ||||| Sbjct 1232066 CAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACC 1232008 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| ||| ||||| | | || | ||| || || || || || |||||| Sbjct 1232007 CACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCTTCACC 1231948 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || |||||||| || |||||| Sbjct 1231947 AGCTACAGCTCTAGCTAAAAGTGTCTTCCCAGTACCTGGT 1231908 >seq668 Length=133065 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 118240 |||||||||| ||||||||||||||||| |||||||| |||||| || |||| || || Sbjct 37995 TAGATATTGGATGTGTATGGCTCAAAGCATTCATTGTT-TCCAAGAATTTGGCTGGTTGA 38053 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAG 118267 ||||||||||| || || | ||||| Sbjct 38054 AGCTGTGGGCATTGGAGCTACAAGAAG 38080 >seq7 Length=222112641 Score = 82.4 bits (90), Expect = 9e-11 Identities = 192/283 (68%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||| || ||||| ||||| || | ||| ||||| | |||||||||| | Sbjct 203994978 TCAAAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCTCTTTCATCATTCCCT 203994919 Query 14210 GGC---ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 || ||| | | || || || || || || ||||||||||| | || || Sbjct 203994918 CCTCCGATTCCAGTCCCTCTTTGTCGC---CCAACAGCATCAATTTCATCAACAAATACA 203994862 Query 14267 ATACATGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGAC 14325 || || || |||||| ||| ||| ||| | ||| || |||| ||| || || Sbjct 203994861 ATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCTCCAAC 203994803 Query 14326 ACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATT 14384 ||| ||||||||||| || || | | | ||| |||| || || || || | || Sbjct 203994802 ACCAACAAACATCTCGACGAATTCTGAACCTGAA-ATTGAGAAAAATGGAACACCCGCTT 203994744 Query 14385 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 |||| || || || || || |||||||||||||| || || Sbjct 203994743 CACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCCGTACCAGG 203994701 >seq2 Length=163962470 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||| ||||| | || || | ||||| |||||| | || Sbjct 163233279 GCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTTAATCCA 163233220 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | || | ||| |||||||| || |||| ||| || ||||||||||| ||| Sbjct 163233219 GGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAGAAAATC 163233160 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 || || ||||| || || || | | |||||||||||| Sbjct 163233159 CCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAA 163233122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422622574120