Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 149 7e-31 seq4 114 2e-20 seq2 86.0 7e-12 >seq7 Length=222112641 Score = 149 bits (164), Expect = 7e-31 Identities = 310/450 (69%), Gaps = 14/450 (3%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||||||||| ||||| | || | || ||| || ||||| | ||||| || || || Sbjct 203995063 ATCAAAGCGTCCTGGTCTCAGCAAAGCCGAATCGAGAATATCTGCACGATTGGTTGCTGC 203995004 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || ||||||||||||| || ||||| |||||||| Sbjct 203995003 AACAACTATTATACCAGTATTTCCTT--CAAAACCATCCATTTCCGTCAATAGTTGGTTC 203994946 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||| | |||||||||| || | | | | |||| | | ||| || | Sbjct 203994945 AGGGTCTGTTCTCTTTCATCATTCCCT--CCTCCGATTCCAGTCCCTCTTTGTCGCCCAA 203994888 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 203994887 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 203994829 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 203994828 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCGACGAATTCTGAACCTGAA 203994769 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 203994768 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCC 203994710 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTCCAAAGT 9938 |||||| || ||| | || || ||||| |||||| | | | |||| | || | Sbjct 203994709 CGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCAC-TGCAGTGA 203994651 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 | |||||||||| ||| | ||| || |||| Sbjct 203994650 ACCTCTCAGGTTTCTTCAAAAATTCTACAA 203994621 >seq4 Length=215701946 Score = 114 bits (126), Expect = 2e-20 Identities = 289/430 (67%), Gaps = 16/430 (4%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9613 |||||| | |||| | ||| || || || | |||| || ||| | |||| | | Sbjct 1232241 ATCAAGAACATCAGGCCTATTAGTTGCAGCCAAAACAATAACACCAGAATTTCCAGA--A 1232184 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || |||||||| || |||| |||||||| | | Sbjct 1232183 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 1232126 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || |||| | ||| |||| || |||||||||||||| || || || |||| Sbjct 1232125 CTCCAAGTCCTGCACCTCTCTGCCTTCCTACAGCATCAATCTCATCGATAAACACAATGC 1232066 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 | || ||||| || || ||||| | ||||| || || || | || |||||| Sbjct 1232065 AAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACA 1232010 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 1232009 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCTTCA 1231950 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || || | |||| || | ||| ||||| || |||||||| ||| | | || Sbjct 1231949 CCAGCTACAGCTCTAGCTAAAAGTGTCTTCCCAGTACCTGGTGGACCGACCAAAAGACAC 1231890 Query 9908 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 9967 ||| ||| ||||| || || || || | ||||| | ||| | ||||||||| Sbjct 1231889 CCTTTTGGTATCTTAGCACCTAAAGCAGTATACTTATCAGGATTCTTTAAAAAATCCACC 1231830 Query 9968 ATTTCTTCCA 9977 | ||||| || Sbjct 1231829 ACTTCTTGCA 1231820 >seq2 Length=163962470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || | ||| | || | |||||| || ||| ||||| || || || Sbjct 143115722 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCGATTAGTAGCAGC 143115663 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 ||||||| | || |||||| | ||||||||||||||| || | ||||||||| Sbjct 143115662 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATCTCAGTGAGAAGTTGGTTG 143115605 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | ||| || || | ||||||||| || | ||||| | | ||| | || || Sbjct 143115604 AGAGTCTGCTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTCTGCCTCCCAACA 143115545 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT 9743 |||||||| |||||||| || | ||||| || ||||| Sbjct 143115544 GCATCAATTTCATCAATAAATATTATGCAAGGCGAATTTT 143115505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248937933480