Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 2e-14 >seq1 Length=301019445 Score = 93.3 bits (102), Expect = 2e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| ||||||||||| || | ||| | ||| || |||| | | | Sbjct 169406751 TCGAGTGCCAAATTGACCATTTGGTTGCAAAAGATTTACATTATTGCTGCCAACATAGTC 169406810 Query 65146 CTGAGCCATTCCGATAAT--TGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 ||| ||||| || || || |||||| | | |||| ||||| |||||||| |||| Sbjct 169406811 CTGTGCCATGCCAATGATGGTGCTGC--TAAGACTCTGCTCACCATGATGATAAGCTGAG 169406868 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTA 65263 || |||||||| || ||| |||||| | ||||||| |||| | |||||| | ||| Sbjct 169406869 TGCTCAGAGACGTAACCAGAAAATTGGGAAACTTTTGCTTCCTTAACAAAATTCCTCTTA 169406928 Query 65264 AATGCAGAATACAATATTTTCC 65285 |||||| | ||| || |||| Sbjct 169406929 AATGCACAGAACAGAATCTTCC 169406950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235675326686550