Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 7e-12 >seq2 Length=163962470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 176/252 (70%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 59866 TCAAGGATCCGGAAGAGAAGG-CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGT 59923 |||||||| | || || ||| | ||| ||||||| || || ||||| |||| || || Sbjct 163233015 TCAAGGATTCTGATGAAAAGAACAGGT-TGTTCCGCGCAATTGAGACTATCCCTTGC-GT 163233072 Query 59924 TAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATCATTTGCACA 59980 | | | || || ||||||| | | ||||| || || | |||| | ||||| | Sbjct 163233073 TGAGAAGAAGGCGAAATGGGCTCTCCGTTGGATTGAAGGTTC-GGAGACT--TTTGCTGA 163233129 Query 59981 ACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTAT 60040 ||| | | |||||||| || || ||||| || ||||||||||| |||||| | || Sbjct 163233130 GCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGTTCGAT 163233189 Query 60041 TTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 || ||| | |||||| | || | ||||| || | | ||||| || ||| ||||||| Sbjct 163233190 ATTTTGGTTGAAAAAGAGAGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTGATTTC 163233249 Query 60101 CCGGGACGAGGG 60112 ||||||| || Sbjct 163233250 GAGGGACGAAGG 163233261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513644376880