Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 seq8 82.4 8e-11 >seq2 Length=163962470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 |||||||| ||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 153292389 AGACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 153292330 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||||| ||| Sbjct 153292329 CAACTGAGCTACGAGAGC 153292312 >seq8 Length=153299543 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 132963728 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 132963669 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 132963668 AACTGAGCTACGAGAGC 132963652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204870994600