Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq12 95.1 9e-15 seq10 82.4 5e-11 >seq8 Length=153299543 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || || |||||||| | || |||| || |||||| || Sbjct 133642791 ATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACAGTCACCCTTGAGGTGGAAAGCTCC 133642732 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| || | | | |||| | || ||||| || ||| | ||| || Sbjct 133642731 GACACCATCGACAA-CGTTAAGGCCAAAATTCAG--GACAAGGAGGGTATCCCGCCAGAC 133642675 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | |||||||| || || |||||||| || | || | | || | |||||| Sbjct 133642674 CAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGTACCCTGGCTGATTAC 133642615 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || ||| | || ||||| |||||| | ||||| || Sbjct 133642614 AACATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTCTCCGTGGTGG 133642565 >seq12 Length=229934170 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--C 27846 ||||||||||||||| || ||| | |||||||| ||||| | || || || || | Sbjct 186924572 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACGATTACCTTGGAGGTTGAGAGTTC 186924513 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| |||||| ||| || |||||||| || |||| || Sbjct 186924512 AGATACCATTGACAAT--GTCAAAGCAAAGATCCAAGACAAAGAGGGGATTCCCCCAGAT 186924455 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG----CTTGTCCGA 27962 ||||| || || |||||||| || |||||| | || || | |||| |||| | || Sbjct 186924454 CAGCAGCGTTTGATTTTTGCTGGTAAACAACTTGAGGATG---GCAGAACTCTTG-CAGA 186924399 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || ||| ||| | |||||||| ||||||||| | || || Sbjct 186924398 CTATAACATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTGAGGGGGGG 186924345 >seq10 Length=205736368 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| ||| | ||||| || ||||| |||| || |||||| | Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || || || || |||||||| ||| | || ||| | Sbjct 339061 GACACCATCGACAAC--GTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACC 339004 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| ||||||||||| || || ||||| || | | | | || ||||||||| Sbjct 339003 AGCAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACA 338944 Query 27968 ACATCCAAAAAGA 27980 | || ||||| || Sbjct 338943 ATATTCAAAAGGA 338931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355855343582229