Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 9e-16 seq12 95.1 1e-14 seq5 87.8 2e-12 seq3 82.4 7e-11 >seq10 Length=205736368 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | ||||||||| || ||| |||||| || || || ||||| ||| Sbjct 187644235 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 187644294 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || | | || |||||||| ||||| ||||| || | |||||||||||| ||||| Sbjct 187644295 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGA 187644354 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || |||||||| ||| || ||| | | | | || || ||| || Sbjct 187644355 ATCCCT-TCTTTGTCTTGGATCTTTGCTTTCACATTATCGATGGTGTCTGAACTCTCAAC 187644413 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| |||| || ||||| || || ||||| Sbjct 187644414 CTCCAAGGTGATGGTCTTTCCAGTCAATGTCTTAACGAAAATCTGCAT 187644461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || | |||||||||||||||| ||| || || ||||| ||||| ||| Sbjct 149589395 CCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCA 149589454 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || || || || || || ||||| || | |||||||| || | || Sbjct 149589455 AGGGTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 149589514 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||| || ||| ||| || | | | | ||||| ||| || Sbjct 149589515 ATCCCCTCTTTATCTTGGATCTTCGCCTTCACATTATCAATTGTATCAGAACTCTCGACC 149589574 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| || |||| || || |||||||| ||||| Sbjct 149589575 TCCAAGGTGATGGTTTTCCCTGTCAATGTCTTGACAAAGATCTGCAT 149589621 >seq12 Length=229934170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || ||||||||||| || || ||| || || || ||||| || ||| Sbjct 186924345 CCCCCCCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCA 186924404 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | || ||||| ||||| || ||||| || | ||||||||| || | ||| Sbjct 186924405 AGAGTTCTGCCATCCTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGGA 186924464 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| ||| || ||||| | | | ||||| ||| || Sbjct 186924465 ATCCCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACC 186924524 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | || || |||| || |||||||| |||||||| Sbjct 186924525 TCCAAGGTAATCGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCAT 186924571 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || || ||||| |||||| | || ||||||||||| || ||||| Sbjct 186925292 CTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCTTCAAGCTGTTTTCCAGCAAA 186925351 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | |||||| || | ||| | || ||| || | | ||| ||| || || | ||| Sbjct 186925352 GATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTAT-CTTGAATTTTTGCTTTAACGT 186925410 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || ||| || || | ||||| | ||||| || || || |||| Sbjct 186925411 TGTCAATGGTGTCAGAACTCTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTAA 186925470 Query 39272 CAAAGATTTGCATCT 39286 ||||||| ||||||| Sbjct 186925471 CAAAGATCTGCATCT 186925485 >seq5 Length=217274494 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| |||||||| || || || || || | || |||||||| || || ||||||| Sbjct 129771662 CTTTTTGGATATTATAGTCTGCCAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 129771721 Query 39155 TAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG 39214 | | |||||||||||| | || | || || || ||| || || |||| | Sbjct 129771722 TCAAACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGT 129771781 Query 39215 CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 | | |||||||| || || || || | || || | || || || || ||||| || | Sbjct 129771782 CAATGGTATCGCTGGATTCAACCTCAATGGTTATGGTCTTCCCTGTTAGGGTTTTCACGA 129771841 Query 39275 AGATTTGCATC 39285 ||||||||||| Sbjct 129771842 AGATTTGCATC 129771852 >seq3 Length=261510930 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| | Sbjct 39250751 CTTTTTGGATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 39250810 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | || |||||||||| |||||| Sbjct 39250811 TCAGTCGCTGCTGGTCCGGTGG 39250832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429537082513451