Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq7 89.7 4e-13 >seq3 Length=261510930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 101000 TTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATA 101059 ||| || || | || |||| | || || |||| ||| | |||||||||||||||||| Sbjct 37145347 TTAATAATAATTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGAATA 37145406 Query 101060 TTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGT 101119 |||||||| || | |||| | ||||||||| |||||||| || | || || |||| Sbjct 37145407 TTGTAATCAGCTAGAGTTCGGCCATCTTCCAACTGTTTGCCACCAAAAATTAGTCTTTAC 37145466 Query 101120 TGGTCTACG-GGCACGCCTTCTTTGTCGGCAATTTT 101154 ||||| ||| || | || |||||||| |||||| Sbjct 37145467 TGGTC-ACGCGGTATTCCGTCTTTGTCCTGAATTTT 37145501 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || |||| ||| | ||||||||||||||||||||||||| || | |||| | Sbjct 37116941 CTCAAAACCAAGTGAAGCATTGATTCTTTTTGAATATTGTAATCAGCTAGAGTTCGACCA 37117000 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||||||||||||| || | || || || || || || | || | ||||||||| Sbjct 37117001 TCTTCCAATTGTTTGCCACCAAAAATTAGTCTCTGCTGATCGAGAGGTATCCCTTCTTTG 37117060 Query 101144 TCGGCAATTTT 101154 || |||||| Sbjct 37117061 TCTTGAATTTT 37117071 >seq7 Length=222112641 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || |||| ||| | ||||||||||| || ||||||||||| |||| |||| | Sbjct 220953991 CTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCCAGAGTTCGACCA 220954050 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||| |||||||| ||| | || ||||| || ||||| || | ||||||||| Sbjct 220954051 TCTTCCAACTGTTTGCCAGCAAAAATTAGCCTCTGCTGGTCAGGAGGTATCCCTTCTTTG 220954110 Query 101144 TC 101145 || Sbjct 220954111 TC 220954112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409652676810393