Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 185 7e-42 seq1 87.8 2e-12 >seq2 Length=163962470 Score = 185 bits (204), Expect = 7e-42 Identities = 392/578 (68%), Gaps = 9/578 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || ||||||||||| |||||||||||||| || ||||| || || || || ||| Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAG--CGGCAAATGACCCAGAAA 4662 ||||| |||||||| ||||||||||| | ||||||||| | | | || | ||||| | Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTT--CCAGAGA 163233168 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 |||| || ||||| || ||||| || || || || | || | || | Sbjct 163233167 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGT-CT--CCGAAC 163233111 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 ||| |||||| | ||||| || || || |||| |||||| || || || | || | Sbjct 163233110 CTTCAATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTG 163233051 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || || || | | |||||| | || | || || | || | || | || | Sbjct 163233050 CGCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGT 163232991 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCT 4901 |||| |||||||| ||||| || |||||||| |||||||| || |||||| | || || Sbjct 163232990 ACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCA-CGCGCCTCA 163232932 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | ||||| || || || || || | | | || || || ||||| || Sbjct 163232931 GCAACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGAT 163232872 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 |||||||| ||||| | || |||| ||||||| | ||| | | | | || |||| | Sbjct 163232871 GCTGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCC 163232812 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 ||||| | ||| | |||||| ||||||||| |||||||||| || || ||| Sbjct 163232811 CAGTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCT 163232752 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || || ||||| |||||| | ||||||||||| || Sbjct 163232751 TTCTTATACATTTCCCAAATCTGTGGATACTGAATTGG 163232714 >seq1 Length=301019445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| |||||||| | ||| || || || ||| || || || ||||| || ||| Sbjct 196654323 CAAGCAAAGTCACAATGGAGACCCTCATCCCTAGAAATGAGCTCATTTGAAAAAGTCAAT 196654382 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| |||||||||||||| |||||||| ||||| Sbjct 196654383 CCTGGCATCAAACCTCTCTTTTTCAGCCAAAAGATAGC 196654420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041132006791