Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-29 seq668 87.8 2e-12 >seq2 Length=163962470 Score = 145 bits (160), Expect = 1e-29 Identities = 403/616 (65%), Gaps = 4/616 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || ||||||||||| || | |||||| || || ||| || || || || || || Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||||| || | ||||| | ||||||||| | |||| |||||| ||| Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAG 163233166 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || || ||||| || ||||| || | | ||| | || | || || | Sbjct 163233165 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGT--CTCCGAACCTT 163233108 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| || | ||||| | |||||||||| || ||||| || || || || || Sbjct 163233107 CAATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGCGC 163233048 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 || | ||| ||||||| ||| || | ||| | || | | | ||| |||| Sbjct 163233047 GGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACA 163232988 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || || || ||||| ||||| || || |||||||| || ||| | ||| || | | Sbjct 163232987 TCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAGCAA 163232928 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || || || | || | |||| | |||||| || || ||||| || | Sbjct 163232927 CTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATGCTG 163232868 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 |||| || || | || || | ||||| | |||| ||| ||||| || | ||||| Sbjct 163232867 CAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCCAGT 163232808 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | | |||| |||| ||| ||||||||||| |||||||| |||||| ||||| | Sbjct 163232807 GACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTTTCT 163232748 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||||||| | ||| || | || || |||||||| ||| |||| || ||| || Sbjct 163232747 TATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTTAG 163232688 Query 48736 TTGCAAGGATAGGTTC 48751 ||||| | ||| || Sbjct 163232687 AAGCAAGCAAAGGCTC 163232672 >seq668 Length=133065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| | ||||| ||| |||||||| || ||||| ||| ||||||| Sbjct 39390 CTCTCTTTCATACTTTGTATACAGCTTCTCAAATTCTTCACCCCAGCAATCTGCCAATCC 39449 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| ||| |||| || | || ||||| | |||| | | || |||| || ||||| Sbjct 39450 AGGAGCCTCACTTGGACAAAATAAAGACCATTGGCCAT-TGCTTTGGACTCTTTCCATAA 39508 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||| | ||| |||||| || ||||| || | | ||| ||||| Sbjct 39509 AAAGATCAGGCACCCAAAGAGCATAGAAAAGATCCCGAGCCCGATGCTCTTC 39560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654672173280