Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-37 seq668 123 4e-23 seq12 105 1e-17 >seq2 Length=163962470 Score = 170 bits (188), Expect = 3e-37 Identities = 406/614 (66%), Gaps = 0/614 (0%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || ||||||||||| || | ||||| || || ||| || || || || || || Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||||| || | |||||| | ||||||||| | |||| |||||| ||| Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAG 163233166 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 || || ||||| ||| || || || || | | ||| | || | | | | | Sbjct 163233165 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCTTCA 163233106 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | ||||||| | ||||| |||| || ||||| || || || || || Sbjct 163233105 ATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGCGCGG 163233046 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || | ||| ||||||||| ||| || | || | || | | | ||| ||||| Sbjct 163233045 AACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 163232986 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||| || || |||||||| || |||||||| || ||| | || |||| || Sbjct 163232985 TCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAGCAACT 163232926 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || ||| | || | ||| | |||||| || || ||||| || ||| Sbjct 163232925 TGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATGCTGCA 163232866 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || || || | || || | ||||| | ||||| ||| ||||| || | ||||| | Sbjct 163232865 AAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCCAGTGA 163232806 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 | |||| |||| ||| ||||||||||| ||||| || || ||| ||||| ||| Sbjct 163232805 CGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTTTCTTA 163232746 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTT 47226 ||||| | ||| || | |||| || || || || ||| |||| || ||| || Sbjct 163232745 TACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTTAGAA 163232686 Query 47227 GCAAGTATAGGTTC 47240 ||||| | ||| || Sbjct 163232685 GCAAGCAAAGGCTC 163232672 >seq668 Length=133065 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||||| ||||||| |||| | || | | ||| |||||||| || Sbjct 39892 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAATACACGTAGCATGGGAATAATTCC 39951 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||| ||| ||||||||| ||| |||||||||| | ||| Sbjct 39952 ATTTGATGTCCCATTTGTCCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 40011 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || |||||||| || |||| || | |||||| || | || ||||| || Sbjct 40012 TACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATAT 40071 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| ||||||||||| ||||| | || || |||||| Sbjct 40072 GCCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 40114 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | || ||||| ||||||||||||||| ||| ||| | | || Sbjct 40209 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 40268 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || || | || | | ||| ||||| | ||| || || || |||| ||| | ||||| Sbjct 40269 ATACGTCTTGATGGCAGATTCAATATCATCCTTG-TGGATCCCAACAGAGACTCTCATCA 40327 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || || | ||||||| || || || || || | ||| || | || | Sbjct 40328 GCATATGTTGTGGCCTTTCTACAACTTTTCCATCAATCTTTAAGAGGTAAGACCTCTCTA 40387 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || || || ||||| Sbjct 40388 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATATATAAT 40436 >seq12 Length=229934170 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | |||||||||||| | |||| | || | || ||| |||| || || Sbjct 176960353 ACCTCCTTGGTCAAAATATCTGGCAGTATCATTAAATACACGCAGCATAGGAACGATTCC 176960294 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||| ||||| ||| ||||| ||||| | ||| Sbjct 176960293 ATTTGATGTCCCGTTTGTTCCACGAATGTAACTCCCAGTAGCACGTATATTGTGCACAGA 176960234 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || ||||| || || ||| || |||||| ||| | || ||||| || Sbjct 176960233 TACACCAATTCCCCCAGCTGATTTGCTTATAGCAGCACATTCTTTAAGAGTATCATATAT 176960174 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| |||||||| || ||||| | || || |||||| Sbjct 176960173 GCCCTCAATACTATCCTCTTTCATGCATATCAGGAAGCAGCTA 176960131 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || |||||||| | ||| |||||||||||||||||||| || ||| | | || Sbjct 176959954 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCATTGAGACATCAAATG 176959895 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||| | || || | ||| ||||| | ||| || ||||| |||| || | ||||| Sbjct 176959894 ATATGTCTTGATGACAGATTCAATATCTTCCTTG-TGGATTCCAACAGATACTCTCATCA 176959836 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || | ||||||| | || | || ||||| | ||| || | || | Sbjct 176959835 GCATGTGTTGTGGCCTTTCTACAATTTTTCCCTGAATCTTCAAAAGGTAAGACCTCTCAA 176959776 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| || | || |||||| || || || || || Sbjct 176959775 GGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCTATCATATATGAT 176959727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919900696640