Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq1 86.0 7e-12 >seq2 Length=163962470 Score = 205 bits (226), Expect = 1e-47 Identities = 406/596 (68%), Gaps = 9/596 (2%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || || ||||||||||| || | ||||| ||||| |||||| ||||| || || ||| Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTG--CAGCAAATGATCCGGAAA 23623 ||||| |||||||| |||| ||||| | ||||||||| | ||| || | ||| || | Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACT--TCCAGAGA 163233168 Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAAT 23683 ||||||| || |||||| ||||| ||||| | ||| | |||| || | | | Sbjct 163233167 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCTT 163233108 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 || ||||| | ||| || |||||| | || || || || ||||||| Sbjct 163233107 CA---ATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTG 163233051 Query 23744 CTTTTAAGAGAAAAGTT-TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 | || | | ||| ||||| ||| ||| | || || | || | || ||||| Sbjct 163233050 CGCGGAACA-ACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTG 163232992 Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||| | || ||| Sbjct 163232991 TACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCA 163232932 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | ||| ||||| || | || || ||| | ||| || ||| |||||||| Sbjct 163232931 GCAACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGAT 163232872 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTC 23982 || |||||||| ||||| || | | ||||| || |||||| | | | | |||| | Sbjct 163232871 GCTGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCC 163232812 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCA 24042 || | | |||| |||||||| ||||| ||| | ||||||||| ||||| ||| Sbjct 163232811 CAGTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCT 163232752 Query 24043 CGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 |||||||||| |||||| | || || ||||| || || ||||| ||| Sbjct 163232751 TTCTTATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 163232696 >seq1 Length=301019445 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| |||||||| || || ||||||||| ||| | ||||| ||||| || ||| Sbjct 196654323 CAAGCAAAGTCACAATGGAGACCCTCATCCCTAGAAATGAGCTCATTTGAAAAAGTCAAT 196654382 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 |||||||| || |||| ||||| | |||||| || ||| |||| | | || || ||| Sbjct 196654383 CCTGGCATCAAACCTCTCTTTTTCAGCCAAAAGATAGCA-CAAAAGCTGCG---AACAAA 196654438 Query 23629 ATA 23631 ||| Sbjct 196654439 ATA 196654441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521477394237800