Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3345 159 7e-34 seq3515 104 5e-17 seq3495 104 5e-17 seq3487 104 5e-17 seq2488 104 5e-17 seq3498 98.7 2e-15 seq3480 98.7 2e-15 seq3457 95.1 3e-14 seq3432 95.1 3e-14 >seq3345 Length=549657 Score = 159 bits (176), Expect = 7e-34 Identities = 586/890 (66%), Gaps = 36/890 (4%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||| || || || ||||| || || ||||| |||||||||||||||| ||| Sbjct 164406 TCTGCATGTTTCCGATTCAGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAGGCGT 164347 Query 229811 CTTTCTGGACCACTGAGGAAGTT--CCTCTGAACGCAG-ACGTCGTCGACTGGCGTGAGA 229867 | |||||||| | ||||| ||| ||||| | ||| | || ||||||| |||| Sbjct 164346 CGTTCTGGACGGCCGAGGAGGTTGACCTCT---CCCAGGATATCCGCGACTGG---GAGA 164293 Query 229868 A-AC--TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCT 229924 | || | || ||||||||||| || ||||||| ||| |||| | |||||||| | || Sbjct 164292 ATACCTTAAACGACGACGAACGCCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCT 164233 Query 229925 CCGATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCA 229983 ||||||| ||||| | || ||||| | | ||| ||| || || ||| | Sbjct 164232 CCGATGGAATTGTACTTGAGAATCT-CGCTTCTCGTTTCATGTCTGATGTTCAGGTGGCT 164174 Query 229984 GAGGCACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAACAA 230040 ||||| || || |||| | ||||| || || | ||| |||||| || || Sbjct 164173 GAGGCTCGTGCCTTCTATGGGTTCCAAATCGCAATCGA-GAA--TATCCACTCCGAGATG 164117 Query 230041 TATGCTCTGCTTATCGACGCGCTTATTTCCGA--CGAGCAAGAACGGAACGAGCTTTTTG 230098 || ||| ||| |||| | ||| || ||||| |||| ||| | | || ||| Sbjct 164116 TACAGTCTACTTCTCGAGACTTACATTAAGGACTCGAGCGAGAA-GGATC-ATCTCTTTC 164059 Query 230099 ATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAG 230158 ||| |||| | |||||| || || ||||| | ||||||| ||| | | Sbjct 164058 GCGCCGTTGAGACCATCCCTTGCGTGGCCAAGAAGGCCGATTGGGCTCTACGCTGGATCG 163999 Query 230159 A-ACCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTG 230217 | || | | | | ||||||||||||||||| |||| | ||||| ||||| || | Sbjct 163998 ACGGCTCGGAGA-CCTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTC 163940 Query 230218 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTC 230277 || || || |||||||| || || |||||| || ||| |||||||||| ||| Sbjct 163939 TTCTCGGGTTCCTTCTGCGCGATTTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTC 163880 Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CT 230336 | || |||||| |||| || ||||| || || ||| | ||| ||| | || Sbjct 163879 ACCTTCTCCAACGAGCTCATTTCACGAGACGAAGGGCTTCATTGCGACTTC-GCGTGTCT 163821 Query 230337 TATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGA-CG-GTCAAACAAATCATTACA 230394 |||| | | ||| | ||| | | ||| || || || | | Sbjct 163820 GCTGTACGGATTATTGAGGAATAGGCT--GAGTGAAGAGCGTGTGCGGGGGATTGTGAGG 163763 Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGG 230453 || || || || | ||| | ||| || |||| ||||| | || || ||| || | || Sbjct 163762 GATGCCGTGGATATCGAGAGGGAATTTGTTTGCGACGCGCTCCCTTG-CGCGTTGGTCGG 163704 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 |||||||| || || ||| | ||||||||||| |||||||| || || | | | ||| Sbjct 163703 CATGAACGGGGATCTCATGAGTCAGTACATCGAGTTCGTAGCAGATCGGCTGCTGGGTGC 163644 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 || || | | || |||| ||| || || |||| | |||||||| ||||| Sbjct 163643 TCTGGGACATGGTAAGATGTATAACGTGGCTAATCCATTTGATTGGATGGAGCTGATTTC 163584 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 | | || || ||||||||||| ||||| ||||| || | || || |||| Sbjct 163583 GTTACAGGGTAAGACCAACTTTTTCGAGAAGCGAGTAGGCGAGTACCAGA 163534 >seq3515 Length=5419773 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 4995484 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 4995543 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 4995544 AGCCCCACGGTGGGC 4995558 >seq3495 Length=2510181 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1211547 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1211488 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1211487 CCCACGGTGGGC 1211476 >seq3487 Length=2134545 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 757114 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 757173 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 757174 CCCACGGTGGGC 757185 >seq2488 Length=21341 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4419 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4478 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4479 CCCACGGTGGGC 4490 >seq3498 Length=2744760 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 932064 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 932005 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 932004 CCCACGGTGGGC 931993 >seq3480 Length=1794408 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 982261 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 982320 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 982321 CCCACGGTGGGC 982332 >seq3457 Length=1294296 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 325210 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 325151 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 325150 CCCACGGTGGGC 325139 >seq3432 Length=933051 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||| |||||||||||||| Sbjct 373930 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGATCGTGGGTTCGAGC 373871 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 373870 CCCACGGTGGGC 373859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057583237935320