Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq4995 847 0.0 >seq4995 Length=1147 Score = 847 bits (938), Expect = 0.0 Identities = 495/512 (97%), Gaps = 0/512 (0%) Strand=Plus/Minus Query 4827 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4886 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 512 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 453 Query 4887 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4946 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 393 Query 4947 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5006 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 392 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 333 Query 5007 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5066 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 332 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 273 Query 5067 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5126 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 272 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 213 Query 5127 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 153 Query 5187 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 5246 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 152 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 93 Query 5247 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 5306 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 33 Query 5307 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 5338 |||||||||||||||||||||||||||||||| Sbjct 32 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 1 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4519 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4578 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 688 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 629 Query 4579 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4635 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 628 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 572 Score = 167 bits (184), Expect = 9e-37 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 58885 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 58944 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 688 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 629 Query 58945 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 59001 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 628 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 572 Score = 138 bits (152), Expect = 4e-28 Identities = 175/238 (74%), Gaps = 17/238 (7%) Strand=Plus/Minus Query 59508 TCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAAGC 59567 ||||||| |||||||||||| |||||||||| | ||||| ||||||||| || |||| Sbjct 467 TCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGT 408 Query 59568 TCTGCATCCACGAACAGCCAGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAACA 59627 | || || |||| ||||||||| || ||||||||||||||||||||||| ||||| Sbjct 407 CCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACA 348 Query 59628 ATGAGTAGCAGATGGGGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGA 59679 |||||| |||||| || | | | ||| |||| || |||| | | Sbjct 347 ATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG----- 296 Query 59680 TTGCGCTGCAATTCTTCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 59736 |||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 295 TTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194851687851072