Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3345 87.8 2e-12 >seq3345 Length=549657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 |||||||||||||||||||| || |||||||||| || || |||||||| || || Sbjct 163821 AGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTG 163880 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || || || | |||||| ||||| ||| || || ||||| || Sbjct 163881 AGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCGC-GCAGAAGGAACCCGAGAA 163939 Query 16318 GAATATACCCTCAACAGATGCAAAAGC 16344 ||| || || || ||| | || || || Sbjct 163940 GAAGATTCCTTCGACACAAGCGAAGGC 163966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511300840432480