Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3345 154 2e-32 seq3444 95.1 1e-14 >seq3345 Length=549657 Score = 154 bits (170), Expect = 2e-32 Identities = 394/591 (67%), Gaps = 13/591 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || ||| ||||| ||||| || || || ||||||| ||| | |||||||| | Sbjct 163816 ACAGCAGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGA 163875 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | ||||| || ||||| || || |||||||| ||||| || || | |||| || || || Sbjct 163876 AGGTGAGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCG-CGCAGAAGGAACCC 163934 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCG 24302 || ||||| |||||||| || || ||||| | || | || || | | | | Sbjct 163935 GAGAAGAAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGCAAAGGTCTCCGAG 163994 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| | ||||||||||||||||||| || ||||| || ||||| Sbjct 163995 CCGTCG---ATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCA 164051 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | || |||||||| | || || | || |||| || || || | | ||| Sbjct 164052 ACGGCGCGAAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGA 164111 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| || || || || || || || || ||||| || || ||||| | |||| Sbjct 164112 CTGTACATCTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCC 164171 Query 24483 TCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | | ||| || || | ||| || || || | ||| ||| || ||||| || Sbjct 164172 TCAGCCACCTGAACATC-AGACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATC 164230 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG-- 24598 ||| || ||||| || | || || | || || | |||||| | || | || Sbjct 164231 GGAGGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGT 164290 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 || | ||| || |||||| | || | || || || || | ||||| || || || Sbjct 164291 ATTCTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGC 164350 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 ||| ||||| || ||||| | |||||| || |||| ||||| ||||| || Sbjct 164351 CTCCGCCTTCTTGTACATTTCCCAGATCTCTGGATACTGAATCGGAAACAT 164401 >seq3444 Length=1312069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | |||||||||||| || || |||||| || ||| | | || | Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 ||||| | ||| | || || ||||| | |||||||| || ||||| | ||| | | Sbjct 1026679 TACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCGACTCTCATCAGC 1026738 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 |||||||| || |||||||| | ||| | | || | | |||||| | || | Sbjct 1026739 ATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1026798 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| || |||||||| | || ||| || || || ||||| || Sbjct 1026799 GTTTTGAATCCAAAATAATCATAGTCAAAATCCCGATCATAAATGAT 1026845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593589764118720