Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3447 116 3e-21 seq17702 113 4e-20 seq3419 104 2e-17 seq3318 104 2e-17 >seq3447 Length=1078458 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 |||| || |||| |||| ||||| ||||| || |||||||||||||| || || || Sbjct 808038 AGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCGAGCGTGCGG 808097 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 ||||||| || ||||| || || |||| || | ||||||||| || | || ||| Sbjct 808098 CCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGGATTCCCTCC 808157 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 || || |||||| ||||| | | ||| ||||| | ||| || | ||| Sbjct 808158 TTATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACCTCTAGGGTT 808217 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||||| ||||||| ||||| || ||||| ||||||||| Sbjct 808218 ATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCATTTTG 808259 >seq17702 Length=19512 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | |||||| ||||| ||||| || ||||| || ||||| | ||||| Sbjct 10308 AGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGTCCGTCC 10249 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| |||||||| | || || | ||| ||||| || | |||||||| || Sbjct 10248 TCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGTATCCCTTCCTTATCT 10189 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| |||||| | | | | ||| || ||| |||| || |||||| Sbjct 10188 TGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGACCTCCAGAGTTATGGTC 10129 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | ||||| || || |||||||| Sbjct 10128 TTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| || || || ||||| | | ||||| ||||| ||||| Sbjct 10521 GTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCG 10462 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||| ||||||||||| || | |||||| ||||| ||||| || Sbjct 10461 GCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTG 10402 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | || || ||| | ||| || | || |||||||||||||| | ||| Sbjct 10401 ACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTT 10342 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 10341 TTTACAAAGATCTGCAT 10325 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | ||||| || || || |||||||| |||||| Sbjct 11235 CCTCCGCGAAGGCGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCC 11176 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| || || ||| | || | | || ||||| || Sbjct 11175 AGGGTCCTGCCATCCTCCAGCTGCTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGG 11116 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||||| | | | | |||||| | ||| Sbjct 11115 ATCCCTTCCTTATCCTGGATCTTCGCCTTCACATTGTCAATGGTATCAGAGCTCTCTACC 11056 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || |||| || || ||||| || ||||| Sbjct 11055 TCCAGAGTGATGGTCTTTCCAGTTAGGGTCTTCACAAAAATCTGCAT 11009 >seq3419 Length=773737 Score = 104 bits (114), Expect = 2e-17 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| || | || ||||||||||| ||||| ||||| |||| Sbjct 377790 CCCCTC--AGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCCA 377847 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | ||||| ||||||||||| ||| |||| | |||||||||||| || | Sbjct 377848 GAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGGGA 377907 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 || ||||| || ||||| || || | | | ||| ||| | ||| | Sbjct 377908 TTCCCTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAACCT 377967 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | ||| | ||||||||| || | ||||| ||||| |||||||| Sbjct 377968 CGAGGGTGACGGTCTTGCCAGTAAGTGTTTTCACAAAGATTTGCAT 378013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| |||||||| |||||||| ||||| || ||| || | || Sbjct 377347 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGTCCTGC-CATCT 377405 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||||||||||||| | || | |||||||| || ||| | || |||||||| Sbjct 377406 TCTAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGGATTCCCTCCTTGTCC 377465 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | | | || ||| |||| ||||| || ||||| Sbjct 377466 TGAATCTTGGCTTTAACATTATCAATTGTGTCAGAACTCTCCACTTCCAGTGTGATGGTT 377525 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | ||||| ||||| |||||||| Sbjct 377526 TTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||||| ||||||||||| || ||||| || || ||| Sbjct 376648 CCACCACGAAGTCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 376707 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| || || ||| | || | |||||||| || || Sbjct 376708 AGGGTACGTCCATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCAGGAGGA 376767 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| ||| || | | | |||||| ||| Sbjct 376768 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAACTCTCAACC 376827 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | |||||||| || || || | ||| || |||||||| |||||| Sbjct 376828 TCGAGAGTAATGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCATT 376875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || |||| | ||||||| ||| | ||| |||||||| |||||||| || || | Sbjct 376874 TTCCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAG 376933 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | | ||| | ||||||| ||| || || ||| |||| || ||||| ||||| | Sbjct 376934 CTAAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTG 376993 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCC 21125 | | ||||||||||| ||| ||| || || || | | | | ||||| || Sbjct 376994 GAATCCCTTCCTTGTCTTGGAT-TTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCA 377052 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| || ||||| || || | || || ||||| || ||||| Sbjct 377053 ACTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 >seq3318 Length=237370 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | ||| || |||||||| ||||| || || || Sbjct 45699 CCACCACGGAGGCGGAGAACAAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGCT 45640 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || |||||||| || || | || || | |||||||||| || Sbjct 45639 AGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 45580 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| |||||| || || | | ||| || || | | |||| Sbjct 45579 ATCCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACC 45520 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || ||||| || || ||||| Sbjct 45519 TCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 45473 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | || |||||||| |||||||||||||| || Sbjct 46155 CCACCACGAAGACGGAGAACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCG 46096 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || || | || || ||||||||||| ||| Sbjct 46095 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46036 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | | || || | | ||| Sbjct 46035 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTGTCGCTGCTCTCTACC 45976 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | || ||||| || || ||||| Sbjct 45975 TCGAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | || |||||||| |||||||||||||| || Sbjct 46383 CCACCACGAAGACGGAGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCG 46324 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || || | || || ||||||||||| ||| Sbjct 46323 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46264 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | | || || | | ||| Sbjct 46263 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTACC 46204 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | || ||||| || || ||||| Sbjct 46203 TCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| ||||| | || || | |||| ||||||||||| || |||||||| || ||| Sbjct 46839 CCCCCACGCAGACGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 46780 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||||||| || || || | || || |||||||||||| || Sbjct 46779 AAAGTCCTGCCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGG 46720 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||||| | | | | || |||| | ||| Sbjct 46719 ATCCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCACTGCTCTCAACC 46660 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||| | || ||||| || || ||||| Sbjct 46659 TCAAGGGTGATCGTCTTCCCGGTAAGGGTCTTGACGAAGATCTGCAT 46613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || || ||||| || ||||| || |||||| Sbjct 45927 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCC 45868 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||| ||||| || || || | || || ||||||||||| ||| Sbjct 45867 AAGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 45808 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || | | | | || || | | ||| Sbjct 45807 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCAATTGTGTCGCTGCCCTCAACC 45748 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || |||| || ||||| || || ||||| Sbjct 45747 TCAAGGGTGATCGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 45701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422167781411024