Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3345 298 6e-76 seq2991 132 5e-26 seq3318 123 3e-23 seq3419 105 7e-18 seq3447 100 3e-16 >seq3345 Length=549657 Score = 298 bits (330), Expect = 6e-76 Identities = 438/614 (71%), Gaps = 18/614 (3%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 |||||| | ||||| || || || || || || || || || ||| |||||||| Sbjct 164420 GAACCCTGACAGGTTCTGCATGTTTCCGATTCAGTATCCAGAGATCTGGGAAATGTACAA 164361 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 ||||| ||||||||||||||||| | ||||||||| ||||| ||| |||| | |||| Sbjct 164360 GAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGGTTGACCTCTCCCAGGATATCCGCGA 164301 Query 116713 CTGGGAGCG---CTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| ||| |||||| |||| ||||| ||||||| ||||| || || ||||| Sbjct 164300 CTGGGAGAATACCTTAAACGACGACGAACGCCACTTCATCACTCACGTCCTTGCATTTTT 164241 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||||||| ||| || || || |||||||| | |||||| || || || Sbjct 164240 CGCCGCCTCCGATGGAATTGTACTTGAGAATCTCGCTTCTCGTTTCATGTCTGATGTTCA 164181 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||||| ||||| || |||||| || || || ||||| || ||||| | ||||| || Sbjct 164180 GGTGGCTGAGGCTCGTGCCTTCTATGGGTTCCAAATCGCAATCGAGAATATCCACTCCGA 164121 Query 116890 AATGT--ATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAG-GAGAAGCTCCG 116943 |||| | || | || |||| || ||| | | ||| ||| |||||| | Sbjct 164120 GATGTACAGTCTA--CTTCTCGAGACTTACATTAAGGACTC----GAGCGAGAAGGATCA 164067 Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 | | || |||| | ||||| || || ||||| |||||||||| ||||| || || Sbjct 164066 TCTCTTTCGCGCCGTTGAGACCATCCCTTGCGTGGCCAAGAAGGCCGATTGGGCTCTACG 164007 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 |||||||| |||| ||| |||| | |||||| || ||||||||||| ||||| Sbjct 164006 CTGGATCGACGGCTCGGAG---ACCTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGA 163950 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || ||||||| ||||| ||| ||| || || ||||| || || ||||| || || Sbjct 163949 AGGAATCTTCTTCTCGGGTTCCTTCTGCGCGATTTTCTGGCTGAAAAAGCGCGGTCTGAT 163890 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| || || || ||| |||||||||||| || | ||||| || || ||||||||||| Sbjct 163889 GCCTGGTCTCACCTTCTCCAACGAGCTCATTTCACGAGACGAAGGGCTTCATTGCGACTT 163830 Query 117184 TGCCTGTTTGCTGT 117197 || ||| |||||| Sbjct 163829 CGCGTGTCTGCTGT 163816 >seq2991 Length=32481 Score = 132 bits (146), Expect = 5e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 |||| ||| ||||| || ||||| || || | ||||| || ||||| ||| | || || Sbjct 26108 CTCCTAAAGATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACCATAACCCTAGAGGTA 26167 Query 40741 GAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 || || | || | | | | | | |||| || || | ||||| |||||||| ||| Sbjct 26168 GAGTCCTCTGATACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCC 26227 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 |||||||||| || ||||||| ||| || || ||||| || || | || |||||| | Sbjct 26228 CCGGACCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTTGAGGATGGTCGTACCCTCGCC 26287 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 || || || |||||||||||| | || |||||||| || | || ||||| || |||| Sbjct 26288 GATTATAATATCCAGAAGGAGTCAACACTGCATCTCGTTCTTCGGTTGAGAGGTGGCG 26345 >seq3318 Length=237370 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || || | Sbjct 45473 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGC 45532 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| || ||||| ||||||| Sbjct 45533 GACACCATCGACAACGTT-AAGGCTAAGATCCAGGACAAAGAAGGGATCCCACCGGACCA 45591 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || |||||||| || |||| || ||||| ||| ||||| Sbjct 45592 GCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGATTACAA 45651 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||| | || || || || || Sbjct 45652 CATCCAAAAGGAATCGACTCTCCACCTTGT 45681 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || |||||| |||| || || || | Sbjct 45929 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 45988 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 45989 GACACAATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 46047 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || ||||| || |||| | |||||| |||||| || Sbjct 46048 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTATAA 46107 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || ||||| || Sbjct 46108 CATTCAGAAGGAGTCAACCCTCCATCTGGT 46137 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| |||| || || || | Sbjct 46157 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 46216 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 46217 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 46275 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || ||||| || |||| | |||||| |||||| || Sbjct 46276 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTCGCCGACTATAA 46335 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || ||||| || Sbjct 46336 CATTCAGAAGGAGTCGACCCTCCATCTGGT 46365 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| |||| || || || | Sbjct 46385 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 46444 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| |||||| | ||||| Sbjct 46445 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCA 46503 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| || || |||||||| |||| | || | ||||| || Sbjct 46504 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGCAGGACATTGGCTGACTATAA 46563 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 46564 CATCCAGAAGGAGTCGACCCTTCACCTGGT 46593 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || |||||| | || || || | || | Sbjct 45701 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATCACCCTTGAGGTTGAGGGCAGC 45760 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | || || |||||||||||| | ||||| Sbjct 45761 GACACAATTGACAACGTT-AAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 45819 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || ||||| || |||| | ||| | || ||||| Sbjct 45820 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCTTGGCGGATTACAA 45879 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 45880 CATCCAGAAGGA 45891 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| | || || || || Sbjct 46613 ATGCAGATCTTCGTCAAGACCCTTACCGGGAAGACGATCACCCTTGAGGTTGAGAGCAGT 46672 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || || ||||| |||||||| Sbjct 46673 GACACCATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGGATCCCACCGGACCAG 46732 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| || || |||||||| || | | || | || || ||| Sbjct 46733 CAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGCAGGACTTTGGCTGATTATAAC 46792 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| ||||| || || |||| Sbjct 46793 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCG 46827 >seq3419 Length=773737 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || ||||| ||| ||||| |||| || || | | Sbjct 378013 ATGCAAATCTTTGTGAAAACACTTACTGGCAAGACCGTCACCCTCGAGGTTGAGAGCTCT 377954 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| || || ||||| ||||| | |||||| Sbjct 377953 GACACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGAATCCCTCCAGACCAG 377894 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || ||||||||||| || || | ||||| || ||||||||| Sbjct 377893 CAGAGATTGATTTTTGCTGGCAAACAGCTTGAGGATGGCCGCACTCTGGCTGACTACAAC 377834 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| |||||| | || || || | || | || ||||||| ||| Sbjct 377833 ATCCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGTCTGAGGGGTGGC 377786 >seq3447 Length=1078458 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| |||||||| ||||| || || || || ||||| ||| | || || || | Sbjct 808258 AAAATGCAGATATTCGTGAAAACCCTAACCGGGAAGACCATAACCCTAGAGGTTGAGTCA 808199 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | ||| || || | || || ||||| ||||| | ||| Sbjct 808198 TCGGATACGATCGACAATGTGAAGACGAAGATCCAGGATAAGGAGGGAATCCCACCAGAC 808139 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | ||| || ||||| || || |||| ||||| ||| ||||| Sbjct 808138 CAGCAGCGGCTGATTTTCGCAGGGAAACAACTCGAGGACGGCCGCACGCTCGCGGACTAT 808079 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| |||| ||||| || || | || | ||||| || Sbjct 808078 AACATCCAGAAGGAATCCACACTGCACCTGGTTCTTCGGCTCAGGGGAGG 808029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515104795576640