Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3419 134 2e-26 seq17702 122 1e-22 seq850 86.0 9e-12 >seq3419 Length=773737 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || ||||| || |||||||| | ||| | || | Sbjct 377330 ATGCAGATATTTGTTAAGACTCTGACAGGGAAGACTATAACCTTGGAGGTCGAGAGTTCT 377271 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || || |||||||| ||||| || ||||| ||||| Sbjct 377270 GATACAATTGACAATGTAAAAGCCAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAG 377211 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| |||||||||||||| | || ||| |||| || | | ||| || || Sbjct 377210 CAGAGGCTTATCTTTGCAGGAAAACAGCTTGAAGATGGTCGTACCCTTGCAGACTACAAC 377151 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| ||||| || | || ||||| Sbjct 377150 ATCCAAAAGGAATCCACCCTCCACTTGGT 377122 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || ||||| || ||| | || |||| | Sbjct 381525 ATGCAAATTTTCGTTAAGACTCTTACTGGGAAAACCATCACTTTGGAAGTTGAGAGTTCT 381466 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||| || || || || ||||| ||||| || ||| Sbjct 381465 GATACTATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAA 381406 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | |||||| | |||| | | ||| |||||| Sbjct 381405 CAAAGGCTCATATTTGCTGGTAAGCAGCTTGAGGATGGAAGAACCCTTGCAGACTATAAT 381346 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | || ||||| | ||| | || ||||| || Sbjct 381345 ATCCAAAAGGAATCTACACTCCACTTGGTGCTCCGTCTTCGTGGTGGCAT 381296 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || ||| | || ||||| | Sbjct 381753 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACCATTACTTTGGAATTTGAAAGTTCT 381694 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || ||||||||||| || || || || ||||| || ||| Sbjct 381693 GATACCATTGATAATGTTAAGGCCAAAATTCAAGACAAGGAGGGAATCCCACCGGACCAA 381634 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||| || || ||| | || ||| | |||| | | || || || Sbjct 381633 CAAAGGTTAATATTTGCTGGTAAGCAACTTGAAGATGGAAGAACTCTTGCTGACTACAAC 381574 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||| ||||| | || ||||| | || | || |||||||| ||| || Sbjct 381573 ATCCAGAAAGAGTCAACCCTACACTTGGTGCTTCGACTCCGTGGTGGTATGCAAATTT 381516 >seq17702 Length=19512 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || || ||| | ||| |||| | Sbjct 10781 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACTCTGGAGGTTGAGAGTTCT 10840 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| |||| |||||| || ||||| ||||| || || ||||||||| Sbjct 10841 GACACAATAGACAATGTAAAGACGAAAATCCAGGATAAGGAAGGCATCCCTCCTGATCAA 10900 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || ||||| | |||||| |||| || |||| || ||||| Sbjct 10901 CAGAGGCTCATTTTTGCCGGGAAACAGCTTGAGGATGGTCGCACCTTAGCTGACTATAAC 10960 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || ||||| ||||| | || || ||| Sbjct 10961 ATACAGAAAGAGTCAACCCTCCACTTAGTT 10990 >seq850 Length=5658 Score = 86.0 bits (94), Expect = 9e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAA 124624 ||| || |||| ||| | ||| | ||| | ||| || ||| |||| |||| || Sbjct 3759 AGGAAAGGCTATCACTTTGGAGGTAGAAACCTCTGACACCATTGTTAATGTAAAGACTAA 3818 Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 ||| ||||| ||||| || | ||| ||| || ||||| | || || | || || || Sbjct 3819 AATCCAAGACAAAGAGGGGAGCCCAATTGACCAGTAAAGGTTAATCTTAGTTGGGAAGCA 3878 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 |||||||||| | || |||| ||| || || |||| ||| |||||||||||||| Sbjct 3879 ATTAGAGGATGAGAGGACTTTAGTAGACTACAAAATTCTAAAGGAATCAACTTTGCA 3935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755288250995200