Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2991 104 3e-17 seq3318 96.9 4e-15 seq3419 95.1 1e-14 seq17702 91.5 2e-13 seq3497 82.4 9e-11 seq3490 82.4 9e-11 seq3435 82.4 9e-11 >seq2991 Length=32481 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || || | || | ||||| ||| |||||| || ||||| ||||| || Sbjct 26343 CCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCG 26284 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||| ||||| ||||| ||||||||||| | || Sbjct 26283 AGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 26224 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||||| ||| || || | | | | || || || || || Sbjct 26223 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTACC 26164 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 || | || ||||| || ||||| | ||||| || ||||| ||||| |||| Sbjct 26163 TCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATCTTTA 26112 >seq3318 Length=237370 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || |||||||| || || || || |||| || ||||| || || ||||| Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | | || |||||| || | || | | | ||| Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCC-TGGATCTTAGCCTTAACGTT 45545 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||||| ||||| || | |||||||| ||||| || || ||||| || Sbjct 45544 GTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGAC 45485 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 45484 GAAGATCTGCAT 45473 >seq3419 Length=773737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| ||||||||||| || | || || ||||| || ||||| || Sbjct 377822 CTCCTTTTGGATGTTGTAGTCAGCCAGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAA 377881 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | || ||||||||| | || | | |||||| ||| ||| | || | |||| Sbjct 377882 AATCAATCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCC-TGAATCTTAGCCTTGACAT 377940 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || |||| |||| ||| ||||| || || || | Sbjct 377941 TATCAATAGTGTCAGAGCTC---TCAACCTCGAGGGTGACGGTCTTGCCAGTAAGTGTTT 377997 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||||||||| Sbjct 377998 TCACAAAGATTTGCAT 378013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || |||| |||| | | || ||||||||||| ||||| || Sbjct 381107 TCCTTTTGAATGTTGTAGTCTGCCAAGGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAAG 381166 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||||| || | | ||||||||| ||||||| || | | Sbjct 381167 ATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTTGCCTTTACGTTA 381226 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| |||||| || | ||||| || || || || | ||||| ||| Sbjct 381227 TCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACA 381286 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 381287 AAAATCTGCAT 381297 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/214 (70%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| ||||| ||||| ||||| || |||| | || || Sbjct 377349 CACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAG-GTCCTGCCATCTTC 377407 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||| || || || ||||| | | |||||| || | || | | |||||||||| | Sbjct 377408 TAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGGATTCCCTCCTTGTCC-T 377466 Query 43094 GATTTTTTGTTTGAGCGTCGCCACC-GTGTCG---CTCGATTCCACATCGACCGTGATGG 43149 || | || | || | | | || ||||| ||| ||||| || | ||||||| Sbjct 377467 GAATCTTGGCTTTAACATTATCAATTGTGTCAGAACTC---TCCACTTCCAGTGTGATGG 377523 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || || |||||||||||||| Sbjct 377524 TTTTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 >seq17702 Length=19512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| || || || | || || |||||||| || ||||| Sbjct 10516 CTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAA 10457 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | ||||||||| | || | || || |||||| ||| | || | |||| Sbjct 10456 GATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC-TGAATCTTCGCCTTGACGT 10398 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | || ||||| |||| || || || | |||||||| ||||| || || || | Sbjct 10397 TATCAACGGTGTCAGAGCTC---TCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTT 10341 Query 43168 TTACAAAGATTTGCAT 43183 |||||||||| ||||| Sbjct 10340 TTACAAAGATCTGCAT 10325 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| || || || | || || |||||||| || ||||| Sbjct 10744 CTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 10685 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||| || | ||||||||| | || | || || |||||| ||| | || | |||| Sbjct 10684 TATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC-TGAATCTTCGCCTTGACGT 10626 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | |||||||| ||||| || || |||| Sbjct 10625 TATCAATGGTGTCAGAGCTC---TCAACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCT 10569 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 10568 TGACAAAGATCTGCAT 10553 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || || || | |||| ||| | ||| ||||| ||||||||||| ||||| Sbjct 10323 CCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 10264 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| || ||||| || || ||||| ||||| | || Sbjct 10263 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGT 10204 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||| || ||| ||| ||| | ||| | | | ||||| ||| || Sbjct 10203 ATCCCTTCCTTATCTTGGATCTTTGCTTTCA-CGTTGTCAATAGTGTCTGAACTC---TC 10148 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| ||||| || || || || || ||||||||||| Sbjct 10147 GACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 >seq3497 Length=2472235 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 ||| || | || ||| ||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 1932165 TTCGCCGCTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 1932106 Query 60124 TATACTAC 60131 |||||||| Sbjct 1932105 TATACTAC 1932098 >seq3490 Length=2069338 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 1847151 AAAAAGTTTCGCCGTTGCCGGGGATCGAACCCGGGTCGTCCGCGTGACAGGCGGAAATAC 1847210 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 1847211 TTACCACTATACTAC 1847225 >seq3435 Length=873550 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| || || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 201677 AAAAATAATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 201618 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 201617 TCACCACTATACTAC 201603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571690627901920