Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3482 89.7 8e-13 >seq3482 Length=2130385 Score = 89.7 bits (98), Expect = 8e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 ||||| || || || || | ||| | |||||| || || || || ||||||| ||| Sbjct 22010 CCTCTGAG-CTCAAGACAAGATGGAGAGTAGACTCGTTCTGAATGTTGTAATCTGCAAGT 21952 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATT 146173 |||| | ||| || |||||||| |||||||| ||||| || || || || ||||||||| Sbjct 21951 GTTCGACCATCTTCCAATTGTTTCCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATT 21892 Query 146174 CCTTCTTTATCTTG 146187 ||||| || || || Sbjct 21891 CCTTCCTTGTCCTG 21878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743361299962880