Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3447 105 4e-18 seq3318 91.5 1e-13 seq3419 86.0 4e-12 >seq3447 Length=1078458 Score = 105 bits (116), Expect = 4e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 |||| || |||||||| | || ||| ||||| ||||| ||||| | ||| ||| Sbjct 808038 AGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCGAGCGTGCGG 808097 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| || | || || ||||||||||| |||||||||||||| || | | |||| Sbjct 808098 CCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGGATTCCCTCC 808157 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 || || ||||| ||| | || | | |||| ||| | || || || || | || Sbjct 808158 TTATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACCTCTAGGGTT 808217 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || |||||||| || |||||||| Sbjct 808218 ATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 808255 >seq3318 Length=237370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| || || |||||||| |||| || |||| |||| Sbjct 45684 AGAACAAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCT 45625 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 || | ||| || || ||||| || || |||||||||| || ||| | || || ||||| Sbjct 45624 TCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCT-TCTTTGTC 45566 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | || | ||| | || || |||| |||||||| Sbjct 45565 CTGGATCTTAGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGT 45506 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || || || |||||||||||| Sbjct 45505 CTTGCCGGTGAGTGTCTTGACGAAGATCTGCATC 45472 >seq3419 Length=773737 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/217 (71%), Gaps = 11/217 (5%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | |||| || ||||| ||||||||||| | || | | | | || Sbjct 377347 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGTC-CTGCCATCT 377405 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| ||||| || || || | || |||||| || ||| | | ||||||||| Sbjct 377406 TCTAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGGATTCCCTCCTTGTCC 377465 Query 34298 GCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTC-GAT---TCGACGTCCACCGTGA 34352 ||||| |||||| || |||| | | ||| || || || |||| |||| Sbjct 377466 TGAATCTTG-GCTTTAACAT----TATCAATTGTGTCAGAACTCTCCACTTCCAGTGTGA 377520 Query 34353 TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| || ||||| |||||||||||||| ||||| Sbjct 377521 TGGTTTTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323002055315840