Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq17702 113 4e-20 seq3318 102 6e-17 seq3419 100 2e-16 seq3482 82.4 6e-11 >seq17702 Length=19512 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| ||||||| | |||| || || ||| ||||||||||| |||||||| Sbjct 10324 GCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 10265 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| ||||| || || || ||||| |||| ||||||||||| ||||| Sbjct 10264 AAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGG 10205 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287 | || ||||| || | | ||||||| || | | | |||| || ||| | Sbjct 10204 TATCCCTTCCTTATCTTGGA-TCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGA 10146 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || || |||||||| || ||||| ||||| ||||||||||| Sbjct 10145 CCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||| ||||||||||||||||| ||| || | || ||| Sbjct 11445 ACCAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCTTCC 11386 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || || || |||||||| || ||||| || || | ||| ||||| ||| | Sbjct 11385 AACTGCTTCCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGA 11326 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | |||||| |||||| Sbjct 11325 ATCTTAGCCTTCACATTGTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTG 11266 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||| || ||||| Sbjct 11265 CCTGTCAAGGTCTTCACAAAAATCTGCAT 11237 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | || | ||| || ||| ||| ||||| |||||||| || Sbjct 10779 CCACCTCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCA 10720 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || || || || || ||||||||||| | || ||| ||||| ||||| Sbjct 10719 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAATATAAGCCTCTGCTGGTCAGGAGGG 10660 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| ||| || ||| || | | | |||| | ||| ||| Sbjct 10659 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACC 10600 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| || || ||||| |||||||| ||||| Sbjct 10599 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 10553 >seq3318 Length=237370 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| || |||||||| ||| || || |||| || || |||||||||||||| Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| ||||| || || | || || |||||| || || |||||| Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTG 45544 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | | ||||||||||| ||| || |||||||| || || ||||| || Sbjct 45543 TCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGACG 45484 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 45483 AAGATCTGCAT 45473 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| ||||| ||||| || | | |||| ||| Sbjct 46593 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAATGTCCTGCCGTCCTCC 46534 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| ||||||| ||| ||||| || || | |||||||||||| Sbjct 46533 AGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 46474 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | | ||| ||||| | ||| |||||||| Sbjct 46473 ATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTCTTC 46414 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 46413 CCTGTAAGGGTCTTGACGAAGATCTGCAT 46385 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| |||||||| || || | |||| || Sbjct 45909 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCCAAGGTCCTGCCGTCCTCG 45850 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| || ||| ||||| || || | |||||||| ||| Sbjct 45849 AGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGG 45790 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | |||| | ||||| ||||| | ||| |||||||| Sbjct 45789 ATCTTGGCCTTAACGTTGTCAATTGTGTCGCTGCCCTCAACCTCAAGGGTGATCGTCTTA 45730 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| || ||||| ||||| Sbjct 45729 CCCGTTAGGGTCTTGACGAAGATCTGCAT 45701 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||| |||||| || | |||| || || || ||||||||||| Sbjct 46120 CTCCTTCTGAATGTTATAGTCGGCGAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 46061 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| || || | |||||||||||| || || ||| || Sbjct 46060 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 46001 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | | ||| ||||| | ||| |||||||| ||||| || ||||| || Sbjct 46000 GTCAATTGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTCTTCCCCGTAAGGGTCTTGAC 45941 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 45940 GAAGATCTGCAT 45929 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||| |||||| || | |||| || || || ||||||||||| Sbjct 46348 CTCCTTCTGAATGTTATAGTCGGCGAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAA 46289 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| || || | |||||||||||| || || ||| || Sbjct 46288 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 46229 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | | ||| ||||| | ||| |||||||| || || || ||||| || Sbjct 46228 GTCAATGGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGAC 46169 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 46168 GAAGATCTGCAT 46157 >seq3419 Length=773737 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||||||| || || |||||| || ||||||||||| Sbjct 377786 GCCACCCCTCAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGC 377845 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || || || ||||| || || || ||||| | ||| ||||| ||||| Sbjct 377846 CAGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGG 377905 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||| ||| ||| || ||| || | | |||| | ||| || Sbjct 377906 GATTCCCTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAAC 377965 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| | |||||||| || || || ||||||||||||||||| Sbjct 377966 CTCGAGGGTGACGGTCTTGCCAGTAAGTGTTTTCACAAAGATTTGCAT 378013 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||||||||||||| || | | | || || Sbjct 377350 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGTCCTGC-CATCTTCT 377408 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || |||||||||| ||| || || || || | |||||||||||| | Sbjct 377409 AGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGGATTCCCTCCTTGTCCTGA 377468 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| | | |||| || |||||| |||| || || || || Sbjct 377469 ATCTTGGCTTTAACATTATCAATTGTGTCAGAACTCTCCACTTCCAGTGTGATGGTTTTC 377528 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||||||||||||||| Sbjct 377529 CCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||| ||||| ||||||||||| || | | || || Sbjct 381545 ACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCATCTTCA 381604 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || ||||| |||| |||||||| || || | ||||||||||| | Sbjct 381605 AGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGTGGGATTCCCTCCTTGTCTTGA 381664 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| |||||| | | | | || || || | |||| ||||| ||||| Sbjct 381665 ATTTTGGCCTTAACATTATCAATGGTATCAGAACTTTCAAATTCCAAAGTAATGGTCTTT 381724 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||||||||| |||||||| Sbjct 381725 CCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||| |||||||||||||| || | | || || || || Sbjct 381094 GTGCAGAGTTGATTCCTTTTGAATGTTGTAGTCTGCCAAGGTCCTCCCATCCTCTAGCTG 381153 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || ||||||| ||| |||||||| || | ||||||||||| ||||| Sbjct 381154 CTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATTTT 381213 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | |||| || |||||||||| || || ||||| || || Sbjct 381214 TGCCTTTACGTTATCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATAGTCTTTCCTGT 381273 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||| ||||| || |||||| Sbjct 381274 CAAAGTCTTAACAAAAATCTGCATG 381298 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 ||||| | ||||| | ||||| || || || |||||||||||||||||| || | | Sbjct 376876 CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 376935 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | | || |||| || || || || || |||| || ||||||||| || || Sbjct 376936 AAGGTC-CTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| ||||| ||| || | | | | || || || || Sbjct 376995 AATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAAC 377054 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || |||||||||||||| || ||||| Sbjct 377055 TTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||| ||||| || || |||| | || || Sbjct 377577 ACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGACCATCTTCA 377636 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || |||||||||| || || || || || | ||| ||||||||| | Sbjct 377637 AGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCCTTGTCCTGA 377696 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| || || | | |||| || || || |||| || || || || Sbjct 377697 ATCTTTGCTTTGACATTGTCAATTGTGTCAGAACTTTCAACTTCCAATGTGATAGTTTTA 377756 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||| || || |||||| Sbjct 377757 CCGGTCAGGGTTTTCACGAAAATCTGCATG 377786 >seq3482 Length=2130385 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| |||||||||||||| || ||| ||| | || |||| |||||| || || || Sbjct 21979 CTCGTTCTGAATGTTGTAATCTGCAAGTGTTCGACCATCTTCCAATTGTTTCCCAGCAAA 21920 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| ||||||||| ||||| | || ||||||||| Sbjct 21919 TATCAACCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCC 21880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394989666713044