Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3419 102 6e-17 seq17702 95.1 9e-15 >seq3419 Length=773737 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 |||||||| ||||||||||||| ||| || || ||||| ||||| ||||||||||| || Sbjct 377104 CCTCCCCGAAGTCTAAGTACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 377163 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | ||||| || ||| ||||||| || || ||||| || Sbjct 377164 AGGGTACGACCATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGG 377223 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 377224 ATTCCTTCCTTATC 377237 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || ||||| ||||||||||| |||| || | ||| Sbjct 377802 AGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCCAGAGTGCGGCCATCC 377861 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| | || | ||| || || || || | || |||||||| Sbjct 377862 TCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCC 377921 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | ||| ||||||| | ||| || | ||||| | | Sbjct 377922 TGAATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCGAGGGTGACGGTC 377981 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| ||||| |||||||| Sbjct 377982 TTGCCAGTAAGTGTTTTCACAAAGATTTGCAT 378013 >seq17702 Length=19512 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | ||| |||| ||| || || || ||||| |||||||||||||| || Sbjct 11463 CCCCCCCGAAGACGAAGAACCAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCA 11404 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | ||||||||| || || || ||| |||| | | ||| || || || Sbjct 11403 AGTGTTCGCCCATCTTCCAACTGCTTCCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 11344 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | ||| || | | | |||||| | ||| Sbjct 11343 ATACCTTCCTTATCCTGAATCTTAGCCTTCACATTGTCTATGGTGTCAGAGCTCTCCACC 11284 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| | ||||| ||||| || || |||||||| ||||| Sbjct 11283 TCGAGGGTAATGGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 11237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379261872498180