Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3345 172 5e-38 seq3419 113 4e-20 seq3318 98.7 9e-16 seq17702 82.4 7e-11 >seq3345 Length=549657 Score = 172 bits (190), Expect = 5e-38 Identities = 405/601 (67%), Gaps = 24/601 (4%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 ||||||||||||| | |||||||| || ||| | |||||||| ||||| || || ||||| Sbjct 164402 CATGTTTCCGATTCAGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAGGCGTCGTT 164343 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGG---ATTCCCTCAA 57661 ||||| | ||| || || ||||| || ||||| | |||| |||| || || | || Sbjct 164342 CTGGACGGCCGAGGAGGTTGACCTCTCCCAGGATATCCGCGACTGGGAGAATACCTTAAA 164283 Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 || || | | || || | ||||| | || ||||||||||| |||||||| || Sbjct 164282 CGACGACGAACGCCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAAT 164223 Query 57722 TGTTAACGAGAATTTGG----TCGAAAGATTTTCA--CAAGAAGTGCAAGTGACGGAGGC 57775 ||| |||||| | | ||| ||||| || || || ||| | ||||| Sbjct 164222 TGTACTTGAGAATCTCGCTTCTCG------TTTCATGTCTGATGTTCAGGTGGCTGAGGC 164169 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 | ||| || || || ||| | || || || || | || || || ||||| || Sbjct 164168 TCGTGCCTTCTATGGGTTCCAAATCGCAATCGAGAATATCCACTCCGAGATGTACAGTCT 164109 Query 57836 ACTCATCGATACGTACGTGAAGGACAACGA-CGAGAAACGTAGACTGTTCAACGCGATCG 57894 ||| |||| || ||| | |||||| ||| |||||| | || || ||| | | Sbjct 164108 ACTTCTCGAGACTTACATTAAGGAC-TCGAGCGAGAAGGATCATCTCTTTCGCGCCGTTG 164050 Query 57895 AAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCC 57953 | || || || ||| | ||||||||||| || ||| | | ||||| | || | Sbjct 164049 AGACCATCCCTTGCG-TGGCCAAGAAGGCCGATTGGGCTCTACGCTGGATCGA---CGGC 163994 Query 57954 ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCG 58013 ||| || || |||||| | || | || ||||| |||||||| || ||||| ||| Sbjct 163993 TCGGAGACCTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCG 163934 Query 58014 GGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || ||| ||| || || || ||| |||| || ||||| |||||||| || || || || Sbjct 163933 GGTTCCTTCTGC-GCGATTTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTT 163875 Query 58073 TAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 ||||||| | || || || ||||| || || ||| || || ||||| || |||| Sbjct 163874 CTCCAACGAGCTCATTTCACGAGACGAAGGGCTTCATTGCGACTTCGCGTGTCTGCTGTA 163815 Query 58133 C 58133 | Sbjct 163814 C 163814 >seq3419 Length=773737 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || || ||||| || ||||| ||||| | || |||||| || Sbjct 377786 CATGCAGATTTTCGTGAAAACCCTGACCGGTAAAACTATCACATTGGAAGTTGAAAGTTC 377727 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | |||||| || ||| | |||||||||||| | || || || | Sbjct 377726 TGACACAATTGACAATGTCAAAGCAAAGATTCA-GGACAAGGAAGGTATTCCACCAGATC 377668 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| | | ||||| |||||||||||| | ||||| | ||| | ||||| | Sbjct 377667 AGCAAAGGTTGATATTTGCTGGCAAACAGCTTGAAGATGGTCGCACTCTTGCAGATTACA 377608 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || ||||| ||||| ||| | || ||||| |||| Sbjct 377607 ATATTCAGAAGGAGTCCACCCTTCACCTGGTTCTTCGTCTTAGGGGTGGTA 377557 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || || |||||| | || |||||| || Sbjct 377102 ATGCAGATTTTTGTGAAGACTCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGTTCA 377043 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | ||| ||||||||||| | || || ||||| Sbjct 377042 GATACCATTGACAATGTCAAGACTAAAATCCAAGACAAGGAAGGGATTCCACCAGACCAA 376983 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || ||||| || |||||||| || | ||| | ||| ||||| || Sbjct 376982 CAGAGGCTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGAGGAC-CTTAGCTGATTACAA 376924 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || ||||| ||| |||| ||| || || | || || Sbjct 376923 CATTCAGAAGGAGTCAACTCTCCATTTGGTGCTTCGATTGCGTGGTGG 376876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || |||||| ||||||| || || ||||| | || || ||| || Sbjct 381298 CATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTGGAAAGTTC 381239 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| |||||||| || | || |||||||| Sbjct 381238 TGACACCATTGATAACGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCACCCGACCA 381179 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| || ||| | || || | ||| || || || || Sbjct 381178 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAGGATGGGAGGACCTTGGCAGACTACAA 381119 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| ||||| ||||| || || || ||| Sbjct 381118 CATTCAAAAGGAATCAACTCTGCACCTTGTCCTT 381085 >seq3318 Length=237370 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || || || | Sbjct 45473 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGC 45532 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | | | ||| | |||||| ||||| | || || ||||| Sbjct 45533 GACACCATCGACAACGTTAAGGCTAAGA-TCCAGGACAAAGAAGGGATCCCACCGGACCA 45591 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || |||||| | |||||| || | |||||| || Sbjct 45592 GCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGATTACAA 45651 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| ||||||||||| || || || || Sbjct 45652 CATCCAAAAGGAATCGACTCTCCACCTTGTTCT 45684 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || ||||||||| |||| || || | Sbjct 46157 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 46216 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || || |||||| Sbjct 46217 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 46276 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || ||| | ||| | ||| |||||| Sbjct 46277 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTCGCCGACTATAAC 46336 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || |||||||| || Sbjct 46337 ATTCAGAAGGAGTCGACCCTCCATCTGGTTCT 46368 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || ||||||||| |||| || || | Sbjct 45929 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 45988 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || || |||||| Sbjct 45989 GACACAATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 46048 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || ||| | ||| | ||| |||||| Sbjct 46049 CAGAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTATAAC 46108 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || |||||||| || Sbjct 46109 ATTCAGAAGGAGTCAACCCTCCATCTGGTTCT 46140 >seq17702 Length=19512 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||||||||| || || ||| |||| || || || Sbjct 11237 ATGCAGATTTTTGTGAAGACCTTGACAGGCAAGACCATTACCCTCGAGGTGGAGAGCTCT 11296 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| |||||||| | || || |||||| Sbjct 11297 GACACCATAGACAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATCCCACCAGACCAG 11356 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || || | || || || || || ||||||||||| | || | || || || || Sbjct 11357 CAACGGTTGATCTTTGCAGGGAAGCAGTTGGAAGA-TGGGCGAACACTTGCTGACTACAA 11415 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| ||||| ||||| || || ||||| ||| | || |||| ||| Sbjct 11416 CATTCAGAAAGAGTCGACCCTCCACCTGGTTCTTCGTCTTCGGGGGGGT 11464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445667417570880