Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3345 107 4e-18 >seq3345 Length=549657 Score = 107 bits (118), Expect = 4e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||| ||| || |||||||||||||| ||| | ||| | ||||||||| Sbjct 163969 GTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTTCTGCGCGATTTTCTGG 163910 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || | ||| | ||||||||||||||| |||||| ||| ||||||| | ||| Sbjct 163909 CTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTCATTTCACGAGAC 163850 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGT 102071 ||||| |||||| ||||||| || || |||||| Sbjct 163849 GAAGGGCTTCATTGCGACTTCGCGTGTCTGCTGT 163816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989358769444620