Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3345 152 7e-32 seq3444 104 3e-17 >seq3345 Length=549657 Score = 152 bits (168), Expect = 7e-32 Identities = 391/588 (66%), Gaps = 7/588 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || ||| ||||| ||||| || || || ||||||| ||| | |||||||| | Sbjct 163816 ACAGCAGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGA 163875 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | ||||| || ||||| || || |||||||| ||||| || || | |||| || || || Sbjct 163876 AGGTGAGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCG-CGCAGAAGGAACCC 163934 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| |||||||| || || ||||| | || | ||| || | | | Sbjct 163935 GAGAAGAAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGCAAAGGTCTCCGAG 163994 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| | ||||||||||||||||||| || ||||| || ||||| | Sbjct 163995 CCGTCGATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACG 164054 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || |||||||| | || || | || |||| || || || | | ||||| Sbjct 164055 GCGCGAAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGACTG 164114 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| || || || || || || || || ||||| || || ||||| | |||||| Sbjct 164115 TACATCTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCCTCA 164174 Query 36509 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | | ||| || || | ||| || || || | ||| ||| || ||||| || Sbjct 164175 GCCACCTGAACATCAG-ACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATCGGA 164233 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAG--TTT 36624 ||| || ||||| || | || || | || || | ||||| | || | || || Sbjct 164234 GGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATT 164293 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 | ||| || |||||| | || | || || || || | ||||| || || ||||| Sbjct 164294 CTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTC 164353 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||||| || ||||| | |||||| || |||| ||||| ||||| || Sbjct 164354 CGCCTTCTTGTACATTTCCCAGATCTCTGGATACTGAATCGGAAACAT 164401 >seq3444 Length=1312069 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | |||||||||||| || || |||||| || ||| | | || | Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| | |||| | || || ||||| | |||||||| || ||||| | ||| | | Sbjct 1026679 TACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCGACTCTCATCAGC 1026738 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 |||||||| || |||||||| | ||| | | || || | |||||| | || | Sbjct 1026739 ATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1026798 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| || |||||||| | || ||| || || || ||||| || Sbjct 1026799 GTTTTGAATCCAAAATAATCATAGTCAAAATCCCGATCATAAATGAT 1026845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658026652729760