Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3345 98.7 7e-16 >seq3345 Length=549657 Score = 98.7 bits (108), Expect = 7e-16 Identities = 258/391 (66%), Gaps = 16/391 (4%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCAT 22799 |||||| ||||||| || ||| ||||| || | || || || || || |||| | || Sbjct 163975 CGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTTCTGCG-CGAT 163917 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||||||| || || || ||||| || | | || ||||||||| | ||| Sbjct 163916 TTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTCATTTC 163857 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 || |||||||| || || || ||||| || ||| |||||| | | || || | Sbjct 163856 ACGAGACGAAGGGCTTCATTGCGACTTCGCGTGTCTGCTGTACGGATTATTGAGGAATAG 163797 Query 22920 ACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTT 22979 | | || | || || | || | |||||||| || || |||| || || Sbjct 163796 GCTGAGTGAAGAGCGTGTGCGGGGGATTGTGAGGGATGCCGTGGATATCGAGAGGGAATT 163737 Query 22980 CTTCCAAGAGGCACTAAAGACACCCCTAC---TTGGT----ATGAATAGTGACAGTATGA 23032 | || || || ||| | | ||||| ||||| | || |||| Sbjct 163736 TGTTTGCGACGCGCT-------CCCTTGCGCGTTGGTCGGCATGAACGGGGATCTCATGA 163684 Query 23033 GACTGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGT 23092 | | |||||| |||| || |||||||| ||||| | ||| ||||| ||| ||||||| Sbjct 163683 GTCAGTACATCGAGTTCGTAGCAGATCGGCTGCTGGGTGCTCTGGGACATGGTAAGATGT 163624 Query 23093 ATAACGTTGCCAATCCATTTGATTTCATGGA 23123 ||||||| || ||||||||||||| ||||| Sbjct 163623 ATAACGTGGCTAATCCATTTGATTGGATGGA 163593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356156475870892