Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3318 104 2e-17 seq17702 84.2 2e-11 >seq3318 Length=237370 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || || || ||||| ||||| |||||| | || | |||||| Sbjct 45682 AACAAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTC 45623 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || || |||||||||| ||||| || || || || ||||||||||| Sbjct 45622 GAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTG 45563 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | |||||| || ||||||||| | ||| | ||||| Sbjct 45562 GATCTTAGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTT 45503 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || || ||||| || ||||| Sbjct 45502 GCCGGTGAGTGTCTTGACGAAGATCTGCAT 45473 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| ||| | || || ||| |||||||| || || Sbjct 46125 GTTGACTCCTTCTGAATGTTATAGTCGGCGAGGGTCCTGCCGTCCTCGAGCTGCTTTCCG 46066 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 46065 GCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 46006 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || ||| ||||| | ||| | |||||| || || | || Sbjct 46005 ACGTTGTCAATTGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTCTTCCCCGTAAGGGTC 45946 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 45945 TTGACGAAGATCTGCAT 45929 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | || ||||| || || ||||||||||| | Sbjct 46839 CCCCCACGCAGACGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 46780 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||| || ||||| ||||||| | ||||| || || || Sbjct 46779 AAAGTCCTGCCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGG 46720 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || || | | || | ||||| || ||| ||| Sbjct 46719 ATCCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCACTGCTCTCAACC 46660 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||| ||||| | || || ||||| || ||||| Sbjct 46659 TCAAGGGTGATCGTCTTCCCGGTAAGGGTCTTGACGAAGATCTGCAT 46613 >seq17702 Length=19512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | || | || |||||||| || || Sbjct 10521 GTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCG 10462 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| || | ||||| || ||||| |||||||||||||| ||| | || | || Sbjct 10461 GCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC-CTGAATCTTCGCCTT 10403 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || || ||||| | | ||| ||||||| || | ||||||||||| | || Sbjct 10402 GACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGT 10343 Query 139747 TTTTACGAATATTTGCAT 139764 |||||| || || ||||| Sbjct 10342 TTTTACAAAGATCTGCAT 10325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495953848988800