Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3345 174 2e-38 seq3444 107 3e-18 >seq3345 Length=549657 Score = 174 bits (192), Expect = 2e-38 Identities = 396/588 (67%), Gaps = 7/588 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || ||| ||||| ||||| || || || ||||||| ||| || |||||||| | Sbjct 163816 ACAGCAGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGA 163875 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | ||||| || ||||| || || |||||||| ||||| || || | |||| || || || Sbjct 163876 AGGTGAGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCG-CGCAGAAGGAACCC 163934 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||||||||| || || ||||| || || | ||| || | | | | Sbjct 163935 GAGAAGAAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGCAAAGGTCTCCGAG 163994 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| | ||||||||||||||||||| || ||||| || || || | | Sbjct 163995 CCGTCGATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACG 164054 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || |||||||| | || || | || |||| ||||| |||| | ||||| Sbjct 164055 GCGCGAAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGACTG 164114 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || || || || || || || || || || ||||| | |||||| Sbjct 164115 TACATCTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCCTCA 164174 Query 50311 GTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | | ||| || || | ||| || || ||| | ||| ||| || ||||| || Sbjct 164175 GCCACCTGAACATCAG-ACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATCGGA 164233 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG-GGTGTTAG--TTT 50426 ||| || ||||| || | || || | || || || ||||| | || | || || Sbjct 164234 GGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATT 164293 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 | ||| || |||||| | || | || || || || | ||||| || || ||||| Sbjct 164294 CTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTC 164353 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| || ||||| | |||||| || |||| || || || || || Sbjct 164354 CGCCTTCTTGTACATTTCCCAGATCTCTGGATACTGAATCGGAAACAT 164401 >seq3444 Length=1312069 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | |||||||||||| || || |||||| || ||||| | || | Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| | |||| | ||||| ||||| | |||||||| || ||||| | ||| | | Sbjct 1026679 TACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCGACTCTCATCAGC 1026738 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 |||||||| || |||||||| | ||| | | || || | ||| || | || | Sbjct 1026739 ATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1026798 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| || |||||||| | || ||| || || || ||||| || Sbjct 1026799 GTTTTGAATCCAAAATAATCATAGTCAAAATCCCGATCATAAATGAT 1026845 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | ||| | || | || |||||||| |||||| Sbjct 1026244 TCCTCCTTGATCAACATAACGTGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 1026303 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || |||||||| ||||| |||||||| || | ||||| || || || ||| Sbjct 1026304 ATTAGAAGTACCATTTGTCCCACGAATATAGCTCCCTGTTGCACGGATGTTGTGAACTGA 1026363 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 1026364 GACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 1026423 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 |||||| ||||||||||| ||||| Sbjct 1026424 GCCCTCAATGCTATCATCTTTCATG 1026448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718109308412960