Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17702 98.7 8e-16 >seq17702 Length=19512 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||||| |||| ||||| || | |||||| || | | || ||| |||| ||| Sbjct 10305 ACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGTCCGTCCTCC 10246 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||| || || |||| |||||||| || | || | ||||| || || | Sbjct 10245 AGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGTATCCCTTCCTTATCTTGG 10186 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| |||| || || ||| ||||| | |||||| || | ||||| || || Sbjct 10185 ATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGACCTCCAGAGTTATGGTCTTG 10126 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||||||||| || |||||||| Sbjct 10125 CCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381287033958312