Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3345 152 7e-32 seq3444 105 9e-18 >seq3345 Length=549657 Score = 152 bits (168), Expect = 7e-32 Identities = 390/588 (66%), Gaps = 7/588 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||| ||||| ||||| || || || || |||| ||| | |||||||| | Sbjct 163816 ACAGCAGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGA 163875 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | ||||| || ||||| || || |||||||| ||||| || || | |||| || || || Sbjct 163876 AGGTGAGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCG-CGCAGAAGGAACCC 163934 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||||||||| || || ||||| | || | ||| || | | | Sbjct 163935 GAGAAGAAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGCAAAGGTCTCCGAG 163994 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| | ||||||||||||||||||| || ||||| || || || | | Sbjct 163995 CCGTCGATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACG 164054 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || |||||||| | || || | || |||| || || |||| | ||||| Sbjct 164055 GCGCGAAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGACTG 164114 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || || || || || || || || || || ||||| | ||||| Sbjct 164115 TACATCTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCCTCA 164174 Query 42416 GTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 | ||||| || || | ||| || || ||| | ||| || || ||||| || Sbjct 164175 GCCACCTGAACATCAG-ACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATCGGA 164233 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 ||| || ||||| || | || || | || || | |||||| |||| |||| Sbjct 164234 GGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATT 164293 Query 42535 ---CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 ||| || |||||| | || | || || || || ||||||| || || || || Sbjct 164294 CTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTC 164353 Query 42592 TGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||||| || ||||| | |||||| || |||| ||||| || || || Sbjct 164354 CGCCTTCTTGTACATTTCCCAGATCTCTGGATACTGAATCGGAAACAT 164401 >seq3444 Length=1312069 Score = 105 bits (116), Expect = 9e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | |||||||||||| || || |||||| || ||||| | || | Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGT--ATTCCTACCGCGACACGCATTA 72535 ||||| | |||| | ||||| |||| |||| ||| ||||| || ||||| | ||| | Sbjct 1026679 TACGTTTTAATAACAGATTCAATAT--CATTCTTGTGAATTCCAACAGCGACTCTCATCA 1026736 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| ||||| || |||||||| | ||| | | || || | |||||| | || | Sbjct 1026737 GCATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAA 1026796 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || |||||||| | || ||| || || || ||||| || Sbjct 1026797 GGGTTTTGAATCCAAAATAATCATAGTCAAAATCCCGATCATAAATGAT 1026845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670990173540640