Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3345 116 5e-21 >seq3345 Length=549657 Score = 116 bits (128), Expect = 5e-21 Identities = 570/884 (64%), Gaps = 30/884 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| || ||||| || || |||||||||||||| ||||| |||| || || | Sbjct 164400 TGTTTCCGATTCAGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAGGCGTCGTTCT 164341 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| ||| ||||| || || ||| |||| | ||| ||||||| | || | | Sbjct 164340 GGACGGCCGAGGAGGTTGACCTCTCCCAGGATATCCGCGACTGGGAGAATACCTTAAACG 164281 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | || || | || || | ||| | | || || || |||| |||||||||||| | Sbjct 164280 ACGACGAACGCCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAATTG 164221 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG- 125233 | || ||||| | || ||| | || ||| | | | |||| ||||| Sbjct 164220 TACTTGAGAATCTCGCTTCTCGTTTCATGTCTGATGTTCA-GGTGGCTGAGG-CTCGTGC 164163 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| || || ||||||||| || ||||| | ||||| || |||||| | ||| | Sbjct 164162 CTTCTATGGGTTCCAAATCGCAATCGAGAATATCCACTCCGAGATGTACAGTCTACTTCT 164103 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA--CACATGCTCTTTAACGCAATCGACACG 125351 || | |||||| || || | || || ||| |||||| ||| | || || Sbjct 164102 CGAGACTTACATTAAGGACTCG-AGCGAGAAGGATCAT-CTCTTTCGCGCCGTTGAGACC 164045 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || | | || ||||| | |||| | || |||||| |||| | | Sbjct 164044 ATCCCTTGCGTGGCCAAGAAGGCCGATTGGGCTCTACGCTGGATC---GACGGCTCGGAG 163988 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 | | ||||| | || ||||| ||||| || || || |||||||| ||||| | Sbjct 163987 ACCTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCC 163928 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || ||| || || || ||||| || |||||||| || ||||| || || || | || Sbjct 163927 TTCTGC-GCGATTTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAA 163869 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590 |||| | || || |||||||| || || || || ||||| || ||| ||| | || | Sbjct 163868 CGAGCTCATTTCACGAGACGAAGGGCTTCATTGCGACTTCGCGTGTCTGCTG-TACG-GA 163811 Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 ||| || | || | || || || || || ||||| | ||||| Sbjct 163810 TTAT-TGAG----GAAT--AGGCTGAGTGAAGAGCGTGTGCGGGGGATTGTGAGGGATGC 163758 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 |||| || || || ||| | ||| | || || | || | |||||||| Sbjct 163757 CGTGGATATCGAGAGGGAATTTGTTTGCGACGCGCTCCCTTGCGCGTTGGTCGGCATGAA 163698 Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGAT 125770 | | | || ||| | ||||||| ||||| || |||||||| || ||| | | | | Sbjct 163697 CGGGGATCTCATGAGTCAGTACATCGAGTTCGTAGCAGATCGGCTGCTG--GGTGCT-CT 163641 Query 125771 TGGCC---GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATATCAC 125826 || | | ||||| || |||| ||||| ||||||| || || | | || || Sbjct 163640 GGGACATGGTAAGATGTATAACGTGGCTAATCCATTTGATTGGATGGAGCTG-ATTTCGT 163582 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || |||||||||||||||||||||||||| || |||||||| Sbjct 163581 TACAGGGTAAGACCAACTTTTTCGAGAAGCGAGTAGGCGAGTAC 163538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740894647804640