Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3419 129 4e-25 seq3318 96.9 3e-15 seq17702 87.8 1e-12 >seq3419 Length=773737 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || ||||| || |||||||| || ||| |||| | ||||| Sbjct 381545 ACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCATCTTCA 381604 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| |||| || | ||||||||| ||| ||||| || ||||| | Sbjct 381605 AGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGTGGGATTCCCTCCTTGTCTTGA 381664 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || |||||||| | |||| | || || |||||||| || Sbjct 381665 ATTTTGGCCTTAACATTATCAATGGTATCAGAACTTTCAAATTCCAAAGTAATGGTCTTT 381724 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || |||||||||||||| Sbjct 381725 CCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| | ||||| | || ||||| || || || || || || ||||||||||| ||| Sbjct 376876 CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 376935 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | ||| | || || || || || ||||| | |||| | |||||||| ||| Sbjct 376936 AAG-GTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| ||||| |||| ||| | || |||||||| | |||| || Sbjct 376995 AATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAAC 377054 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || || ||||| || |||||||| |||||| Sbjct 377055 TTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCATA 377103 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || || |||||||| ||| | | | ||||| | ||| Sbjct 377583 TGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGACCATCTTCAAGCTGT 377642 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 |||||||| ||||||| | ||| || || |||||| ||||| ||||| ||| ||| Sbjct 377643 TTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCCTTGTCCTGAATCTTT 377702 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || || | |||| || || || || || |||||||| || Sbjct 377703 GCT-TTGACATTGTCAATTGTGTCAGAACTTTCAACTTCCAATGTGATAGTTTTACCGGT 377761 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||||| || ||||| ||||| Sbjct 377762 CAGGGTTTTCACGAAAATCTGCAT 377785 >seq3318 Length=237370 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || ||||| |||||||||||| ||| | | ||||||| | ||| Sbjct 45675 TGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGT 45616 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||| || ||||| ||| || ||||||||||| || || Sbjct 45615 TTTCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTA 45556 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||||| | || || || ||||| ||||| || || || Sbjct 45555 GCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTG 45496 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 45495 AGTGTCTTGACGAAGATCTGCAT 45473 >seq17702 Length=19512 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || ||||| ||||| || | || | || || | || Sbjct 11211 TGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCCAGGGTCCTGCCATCCTCCAGCTGC 11152 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||||||||||||||| ||| || ||||| || || || || Sbjct 11151 TTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTC 11092 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || |||||||| | ||||| || | || ||||| || || || Sbjct 11091 GCCTTCACATTGTCAATGGTATCAGAGCTCTCTACCTCCAGAGTGATGGTCTTTCCAGTT 11032 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 11031 AGGGTCTTCACAAAAATCTGCAT 11009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362100788655924