Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq4995 847 0.0 >seq4995 Length=1147 Score = 847 bits (938), Expect = 0.0 Identities = 495/512 (97%), Gaps = 0/512 (0%) Strand=Plus/Minus Query 36716 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 36775 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 512 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 453 Query 36776 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 36835 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 393 Query 36836 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 36895 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 392 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 333 Query 36896 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 36955 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 332 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 273 Query 36956 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 37015 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 272 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 213 Query 37016 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 37075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 153 Query 37076 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 37135 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 152 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 93 Query 37136 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 37195 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 33 Query 37196 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 37227 |||||||||||||||||||||||||||||||| Sbjct 32 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 1 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 36408 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 36467 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 688 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 629 Query 36468 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 36524 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 628 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 572 Score = 167 bits (184), Expect = 9e-37 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 29830 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 29889 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 688 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 629 Query 29890 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 29946 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 628 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 572 Score = 138 bits (152), Expect = 5e-28 Identities = 175/238 (74%), Gaps = 17/238 (7%) Strand=Plus/Minus Query 30453 TCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAAGC 30512 ||||||| |||||||||||| |||||||||| | ||||| ||||||||| || |||| Sbjct 467 TCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGT 408 Query 30513 TCTGCATCCACGAACAGCCAGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAACA 30572 | || || |||| ||||||||| || ||||||||||||||||||||||| ||||| Sbjct 407 CCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACA 348 Query 30573 ATGAGTAGCAGATGGGGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGA 30624 |||||| |||||| || | | | ||| |||| || |||| | | Sbjct 347 ATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG----- 296 Query 30625 TTGCGCTGCAATTCTTCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 30681 |||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 295 TTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200490984553068