Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq17702 89.7 4e-13 seq3419 89.7 4e-13 >seq17702 Length=19512 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| || || || | | ||| |||| ||||| || || |||||||| Sbjct 11428 CTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCTTCCAACTGCTTCCCTGCAAA 11369 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||||||||||||| | || | |||||| ||||| ||| || || || | Sbjct 11368 GATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTAGCCTTCACATT 11309 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | || || | |||||| |||| ||||| || || || || || |||||||| Sbjct 11308 GTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTGCCTGTCAAGGTCTTCAC 11249 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 11248 AAAAATCTGCAT 11237 >seq3419 Length=773737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| || || |||||||| ||||||| ||||| || |||| | ||| |||| Sbjct 376718 CATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCAGGAGGAATACCCTCTT 376777 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || |||||| || ||| ||||| | ||| || |||| |||| Sbjct 376778 TGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAACTCTCAACCTCGAGAGTAA 376837 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || | |||||||||||||| ||||| Sbjct 376838 TGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCAT 376874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354700791093072