Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3419 86.0 5e-12 seq17702 82.4 6e-11 >seq3419 Length=773737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| | | ||| ||||| || || |||||| ||||||||||||||||| Sbjct 376876 CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 376935 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || | | | ||||||| ||||||||| | |||| | | ||| || || || Sbjct 376936 AAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGA 376995 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||||| ||||| | | |||||||| | | || Sbjct 376996 ATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAACT 377055 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || || || ||||| ||||||||||||||||| Sbjct 377056 TCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 >seq17702 Length=19512 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || ||||||||||| ||||| | | |||| | || |||| |||||| || | | Sbjct 11428 CTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCTTCCAACTGCTTCCCTGCAAA 11369 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || ||||| || || | || |||||| ||| ||| || ||| | | Sbjct 11368 GATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTAGCCTTCACATT 11309 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||||||| || | |||| ||||| || ||||| || || || | || ||||| Sbjct 11308 GTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTGCCTGTCAAGGTCTTCAC 11249 Query 48715 AAAAATCTGCATC 48727 ||||||||||||| Sbjct 11248 AAAAATCTGCATC 11236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421159999641764