Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3454 113 2e-20 seq3496 109 3e-19 seq3489 107 1e-18 seq3515 105 3e-18 seq3461 105 3e-18 seq3507 100 1e-16 seq3504 96.9 2e-15 >seq3454 Length=1104993 Score = 113 bits (124), Expect = 2e-20 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| |||| | ||| |||| ||| ||||||||| | | |||||||| ||||||||| Sbjct 605607 AAAGATAGGAATAAAAAAAGTAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 605548 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 605547 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 605507 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 358755 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 358696 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 358695 CAACTGAGCTAATAGGCCG 358677 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 345890 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 345949 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 345950 TGAGCTAATAGGCC 345963 >seq3496 Length=2546822 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2489519 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 2489460 Query 11514 ACTGAGCTAATGGGCCG 11530 ||||||||||| ||||| Sbjct 2489459 ACTGAGCTAATAGGCCG 2489443 >seq3489 Length=2417058 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || ||||| | |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 2183685 ATGAAAAAGTAGGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 2183626 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 2183625 ACGCTCTAACCAACTGAGCTAATAGGCC 2183598 >seq3515 Length=5419773 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3143327 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 3143268 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 3143267 AACTGAGCTAATAGGCC 3143251 >seq3461 Length=1157305 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 526212 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 526271 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 526272 CCAACTGAGCTAATAGGCC 526290 >seq3507 Length=2795260 Score = 100 bits (110), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| | | |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 1080063 AAAAAAAAATTATAGGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 1080004 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||| |||||||||| | | |||||| Sbjct 1080003 ACGACGCTCTAACCAACTGAGTCACTAGGCCGT 1079971 >seq3504 Length=2816627 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || ||| || ||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 796026 AATAAAAAAAGAAATAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 796085 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||| ||||| |||| Sbjct 796086 GCACGACGCTCTAACCAACT---CTAATAGGCC 796115 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261434587482064