Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3338 188 1e-43 seq2238 165 1e-36 seq3377 141 1e-29 seq3326 125 1e-24 seq3515 122 1e-23 >seq3338 Length=342735 Score = 188 bits (208), Expect = 1e-43 Identities = 190/247 (77%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||| ||||| |||||| | ||||||||| | |||||||||| Sbjct 243590 GAGATAACATCCAAGGAATCACGAAGCCGGCTATCAGACGTCTGGCTAGGCGTGGTGGAG 243531 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || || ||||||| |||| ||||| ||| | |||||||||||| Sbjct 243530 TAAAGCGAATCAGCGGCCTGATCTATGAGGAGACTCGTGGAGTTCTCAAGATCTTCCTCG 243471 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||||| | ||| |||||||||||| ||||||||||||||| Sbjct 243470 AGAACGTAATCCGCGATGCGGTGACCTACACCGAGCACGCTCGCCGTAAGACTGTCACCG 243411 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || |||||| | || || || || | | | || ||||| || | | Sbjct 243410 CCATGGATGTTGTTTATGCACTCAAGCGCCAGGGAAGGACTCTCTACGGTTTCGGCGGCT 243351 Query 16698 AATCTTC 16704 ||| ||| Sbjct 243350 AATTTTC 243344 >seq2238 Length=15815 Score = 165 bits (182), Expect = 1e-36 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || |||||||| ||||| ||||| | || |||||| | || || || Sbjct 13077 GACAACATCCAGGGCATCACCAAACCAGCCATCCGCAGGCTCGCTCGTAGGGGAGGTGTG 13136 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || ||| || ||||||| |||| || | |||| | |||||||||||| || Sbjct 13137 AAGCGAATCAGTGGTCTGATCTATGAGGAGACACGAGGTGTTCTCAAGATCTTCCTCGAG 13196 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||||| |||||| || ||||| |||||||| | | ||||||||||| || Sbjct 13197 AACGTTATCCGTGATGCGGTCACTTATACTGAGCACGCGAGGAGGAAGACTGTCACTGCC 13256 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | |||||||||| | || || ||||| ||||| Sbjct 13257 ATGGATGTTGTCTATGCTCTCAAGAGGCAAGGCCGTACTCTCTACGGCTTTGGTGGTTAA 13316 Query 16700 T 16700 | Sbjct 13317 T 13317 >seq3377 Length=652516 Score = 141 bits (156), Expect = 1e-29 Identities = 191/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | || |||||||||||||| || || |||||||| || || Sbjct 11219 GCCAAGCGTCATCGTAAGGTGCTCCGAGATAACATCCAGGGCATTACCAAGCCCGCAATT 11160 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | ||||| || |||||| || || ||| | || || |||| Sbjct 11159 CGCCGTTTGGCTCGTAGAGGTGGCGTGAAGCGTATCAGCGGTTTGATATACGAGGAGACC 11100 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | ||||||||||| ||| ||| || | |||||| | ||| || ||| Sbjct 11099 CGAGGTGTTCTTAAGATCTTCCTGGAGAACGTGATTCGCGATGCTGTGACCTACACGGAG 11040 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||| || || |||||||| |||| ||||| ||||| | || ||| Sbjct 11039 CATGCGAGGAGGAAGACGGTGACGGCCATGGATGTCGTTTATGCTTTGAAGAGGCAGGGC 10980 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | |||| || || || |||| Sbjct 10979 AGGACCCTTTACGGATTCGGCGGTTA 10954 >seq3326 Length=289333 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||| ||||| || || || ||| |||||||||| ||||| ||| Sbjct 75714 GATAACATCCAGGGAATCACTAAGCCCGCCATTCGCCGTTTGGCTCGTCGAGGTGGCGTC 75773 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||| || |||| || || | | | || |||||||||||| | || Sbjct 75774 AAGCGTATTAGTGGTCTGATCTACGAGGAAACAAGAGGAGTGTTGAAGATCTTCTTGGAG 75833 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | || ||||||||||| | | || || || || | Sbjct 75834 AATGTGATTCGTGATGCTGTGACATACACCGAGCACGCCAGGAGAAAAACAGTGACTGCT 75893 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | ||||| || ||||| | ||||| | | |||| ||||| || |||| Sbjct 75894 ATGGATGTTGTCTACGCCTTGAAGAGACAAGGTAGGACTCTTTACGGTTTCGGGGGTTA 75952 >seq3515 Length=5419773 Score = 122 bits (134), Expect = 1e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || |||||||| || || |||||||| || || Sbjct 4837919 GCGAAGCGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGGATTACCAAGCCCGCGAT 4837861 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | ||||||||||||||||| | || || |||| || |||| Sbjct 4837860 CAGACGTCTGGCGAGACGTGGTGGAGTCAAGCGAATTAGCGGTCTGATCTACGAGGAGAC 4837801 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || ||||||| ||| | ||| ||| |||| ||||| | |||||||| Sbjct 4837800 CAGAGGCGTCCTGAAGATTTTCTTGGAGAACGTGATCCGCGATGCAGTAACTTATACCGA 4837741 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||||| | ||||| || ||| | ||||| | ||||||||||| || Sbjct 4837740 GCACGCTAGGAGGAAGACCGTGACCGCGATGGACGTTGTCTATGCATTAAA 4837690 Score = 105 bits (116), Expect = 1e-18 Identities = 188/273 (69%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||||| ||||||||||| |||||||||||||| || ||| Sbjct 4839990 GCAAAGCGTCACCGCAAGGTACTTCGCGATAACATCCAGGGAATCACCAAGCCCGCGATC 4839931 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||||||| | | |||||||| ||||| | || || |||| || |||| Sbjct 4839930 AGACGTCTGGCTAGAAGAGGTGGAGTTAAGCGAATTAGCGGCCTGATCTACGAGGAGACC 4839871 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | ||||| ||| | | | || || | || || | ||||| ||| Sbjct 4839870 AGAGGAGTCCTCAAGATATTCTTGGAAAATGTGATTCGCGACGCAGTGACTTATACAGAG 4839811 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | | ||||| || || |||||||| | |||||||| |||| | || ||| Sbjct 4839810 CACGCGAGAAGGAAGACCGTGACAGCCATGGATGTGGTCTATGCTCTGAAGAGACAGGGC 4839751 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | | || || ||||| ||| || |||| Sbjct 4839750 AGGACTTTGTACGGGTTTGGTGGTTGAT-TTCT 4839719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79058958250452