Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3318 89.7 4e-13 seq17702 86.0 5e-12 >seq3318 Length=237370 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| || ||| || | Sbjct 45929 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 45988 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| ||||| || ||||| || || || || Sbjct 45989 GACACAATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 46048 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||| ||||| || | ||| | | || ||| |||||| Sbjct 46049 CAGAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTATAAC 46108 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 46109 ATTCAGAAGGAGTCAAC 46125 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| || ||| || | Sbjct 46157 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 46216 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| || ||||| || || || || Sbjct 46217 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 46276 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||| || || || | ||| | | || ||| |||||| Sbjct 46277 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTCGCCGACTATAAC 46336 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 46337 ATTCAGAAGGAGTCGAC 46353 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | || || || | || ||| | || || ||| || | Sbjct 45473 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGC 45532 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||||||||| || || || || || Sbjct 45533 GACACCATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGGATCCCACCGGACCAG 45592 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| || || |||||||| | | | | | | |||||| ||| Sbjct 45593 CAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGATTACAAC 45652 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 45653 ATCCAAAAGGAATCGAC 45669 >seq17702 Length=19512 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | || || || | || || | || || ||| | Sbjct 10325 ATGCAGATCTTTGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCT 10384 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||| | || | ||||| |||||| |||||||||||||| ||||| || || Sbjct 10385 GACACCGTTGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAG 10444 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||||||||| ||||| |||| | | | | ||||| ||| Sbjct 10445 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTTGCTGATTACAAC 10504 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| || || Sbjct 10505 ATACAGAAAGAGTCCAC 10521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429842919393420