Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq17702 116 3e-21 seq3318 116 3e-21 seq3419 109 5e-19 seq2991 109 5e-19 seq3447 95.1 1e-14 >seq17702 Length=19512 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| ||||| || || ||||||||||| | ||| || ||||| ||||||||||| Sbjct 10522 GGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCC 10463 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | | ||||||||| |||||||| ||||||||||| || ||| ||| Sbjct 10462 GGCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTT 10403 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || || || || | | ||| | || | || | ||| || ||||| ||||| Sbjct 10402 GACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGT 10343 Query 131217 TTTTACGAAAATCTGCATG 131235 |||||| || ||||||||| Sbjct 10342 TTTTACAAAGATCTGCATG 10324 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||| || || || | ||| | || || ||||| ||||| ||||| || Sbjct 10324 GCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 10265 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||| ||||| ||||| Sbjct 10264 AAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGG 10205 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| || || ||| || ||| || | | || | ||| || | ||||| Sbjct 10204 TATCCCTTCCTTATCTTGGATCTT-TGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGA 10146 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| |||||||| ||||| || ||||| Sbjct 10145 CCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| ||||| || || ||||||||||| | |||||| ||||| ||||||||||| Sbjct 10750 GGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCGAGCTGCTTGCC 10691 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| | || | | ||||||||| |||||||| ||||||||||| || ||| ||| Sbjct 10690 GGCGAATATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTT 10631 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | || || | | ||| | || | || | ||| || ||||| || || Sbjct 10630 GACGTTATCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGGGT 10571 Query 131217 TTTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 10570 CTTGACAAAGATCTGCAT 10553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || ||||| | || | ||| || || || || ||||| ||||| | Sbjct 11235 CCTCCGCGAAGGCGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCC 11176 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | ||||| |||||||| ||||| |||| ||||| || ||||| || || Sbjct 11175 AGGGTCCTGCCA-TCCTCCAGCTGCTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGG 11117 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || ||| ||| ||| | | || | ||||| | | ||| | Sbjct 11116 GATCCCTTCCTTATCCTGGATCTTCGCCTTCACATTGTCAATGGTATCAGAGCTCTCTAC 11057 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || ||||| || || || |||||||||||| Sbjct 11056 CTCCAGAGTGATGGTCTTTCCAGTTAGGGTCTTCACAAAAATCTGCATG 11008 >seq3318 Length=237370 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||| |||||||| |||||||||||| | ||| || ||| || ||||| || || Sbjct 45669 GTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCG 45610 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||||||||||||||| ||||| ||||||||||| ||| || ||| Sbjct 45609 GCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTAGCCTTA 45550 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || ||| || ||| | || | ||| | ||| || ||||| || || Sbjct 45549 ACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTC 45490 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 45489 TTGACGAAGATCTGCAT 45473 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||| ||||| || ||||||||||| | Sbjct 45927 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCC 45868 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| |||||||| || ||| |||| | | ||||||||| || ||| Sbjct 45867 AAGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 45808 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||| | | || | || ||| || ||| | Sbjct 45807 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCAATTGTGTCGCTGCCCTCAACC 45748 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 45747 TCAAGGGTGATCGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 45701 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | |||||||||||| |||||||| || ||| Sbjct 46383 CCACCACGAAGACGGAGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCG 46324 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| |||||||| || ||| |||| | | ||||||||| || ||| Sbjct 46323 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46264 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| || ||| | Sbjct 46263 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTACC 46204 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || ||||| |||||||| Sbjct 46203 TCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || ||||| || || | Sbjct 46611 CCACCACGAAGACGAAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCC 46552 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| |||||||| || ||| |||| || | ||||||||| || ||| Sbjct 46551 AATGTCCTGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 46492 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| || ||| | Sbjct 46491 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTACC 46432 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || ||||| |||||||| Sbjct 46431 TCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46385 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||| || | || | ||| |||||||| || ||||| ||||| | Sbjct 46839 CCCCCACGCAGACGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 46780 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || |||||||| || ||| |||| | | |||||||||||| || Sbjct 46779 AAAGTCCTGCCA-TCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGG 46721 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || ||| || ||| | | || | || || || ||| | Sbjct 46720 GATCCCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCACTGCTCTCAAC 46661 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| || || || ||||| |||||||| Sbjct 46660 CTCAAGGGTGATCGTCTTCCCGGTAAGGGTCTTGACGAAGATCTGCAT 46613 >seq3419 Length=773737 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || || || | ||| ||||||||||| |||||||| || Sbjct 377786 GCCACCCCTCAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGC 377845 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||| ||||| || | || || | ||||||||| ||||| Sbjct 377846 CAGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGG 377905 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || || || || || ||||| | || | ||| || | | ||| | Sbjct 377906 GATTCCCTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAAC 377965 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| ||||| || || || || ||||| || || || ||||| Sbjct 377966 CTCGAGGGTGACGGTCTTGCCAGTAAGTGTTTTCACAAAGATTTGCAT 378013 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| || ||||||||||| | Sbjct 376648 CCACCACGAAGTCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 376707 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| ||||| |||| || | |||||| || ||||| Sbjct 376708 AGGGTACGTCCATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCAGGAGGA 376767 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || |||| | || | ||||| | ||| | Sbjct 376768 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAACTCTCAACC 376827 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| |||||| || || || || || || || |||||||| Sbjct 376828 TCGAGAGTAATGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCAT 376874 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| ||||| || ||||| ||||| | || |||||||| |||||||||||||| ||| Sbjct 376876 CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 376935 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | | ||||| | |||||| || || | || | | ||| ||||| || || Sbjct 376936 -AAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC--TCG 131184 || ||||| ||||| |||||| ||||| | || | ||||| || || || Sbjct 376995 AATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATC--TGAACTTTCA 377052 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||| | || || || || ||||| || || ||||||||||| Sbjct 377053 ACTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || || ||||||||||||||||| || | Sbjct 381071 CCACCACGAAGACGAAGGACAAGGTGCAGAGTTGATTCCTTTTGAATGTTGTAGTCTGCC 381130 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | | |||||||||||||| || || |||| || | ||||||||| || ||| Sbjct 381131 AAGGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGG 381190 Query 131128 ATTCCTTCTTTGTCGGTGATTTT 131150 ||||| || ||||| |||||| Sbjct 381191 ATTCCCTCCTTGTCTTGGATTTT 381213 >seq2991 Length=32481 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||| || || || | ||| | || |||||||| || || || |||||| Sbjct 26344 GCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGC 26285 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| |||||||| || ||| |||| | ||||||||||||||| || Sbjct 26284 GAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 26225 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||| | | || | ||||| | |||||| | Sbjct 26224 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTAC 26165 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| || | || || ||||| |||||||| Sbjct 26164 CTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 26117 >seq3447 Length=1078458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| || ||||| || || | ||||| |||||| || || || ||| Sbjct 808059 GTGGATTCCTTCTGGATGTTATAGTCCGCGAGCGTGCGGCCGTCCTCGAGTTGTTTCCCT 808118 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||||||||||| || |||||||| || || || ||| ||| ||| Sbjct 808119 GCGAAAATCAGCCGCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTCGTCTTC 808178 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||| | ||||| | || | ||| | ||| || |||||||| ||| Sbjct 808179 ACATTGTCGATCGTATCCGATGACTCAACCTCTAGGGTTATGGTCTTCCCGGTTAGGGTT 808238 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 808239 TTCACGAATATCTGCAT 808255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471907989557760