Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3447 95.1 1e-14 seq17702 87.8 1e-12 >seq3447 Length=1078458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||| || |||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 808029 CCTCCCCTGAGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCG 808088 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | |||||| || || |||| |||||||| ||||| || Sbjct 808089 AGCGTGCGGCCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGG 808148 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || || | | |||||| | | | | || || | ||| Sbjct 808149 ATTCCCTCCTTATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACC 808208 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 || | ||| ||||| || ||||| || ||||| || || |||||||||||| ||| Sbjct 808209 TCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCATTTTGCAGC 808263 >seq17702 Length=19512 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| || ||||||||||| || || | ||| | ||||| | || Sbjct 10527 TGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGC 10468 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | ||||||| ||| ||||| ||| | ||| |||||||| ||| | | Sbjct 10467 TTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTC 10408 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | || ||||| | ||| || | |||||||| || ||||| Sbjct 10407 GCCTTGACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTG 10348 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| |||||||| Sbjct 10347 AGAGTTTTTACAAAGATCTGCAT 10325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || || |||||||| || | ||| ||||| Sbjct 10308 AGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGTCCGTCC 10249 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || |||||||| | || || ||||||||||| ||| | || || || || Sbjct 10248 TCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGTATCCCTTCCTTATCT 10189 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| ||||| | | | | |||||| ||| |||| || |||| Sbjct 10188 TGGATCTTTGCT--TTCACGTTGTCAATAGTGTCTGAACTCTCGACCTCCAGAGTTATGG 10131 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || || || ||||| Sbjct 10130 TCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| || ||||||||||| || || | ||| | ||||| | || Sbjct 10755 TGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCGAGCTGC 10696 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | ||||||| ||| ||||| ||| | ||| |||||||| ||| | | Sbjct 10695 TTGCCGGCGAATATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTC 10636 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | ||| || | |||||||| || ||||| Sbjct 10635 GCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTG 10576 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| |||||||| Sbjct 10575 AGGGTCTTGACAAAGATCTGCAT 10553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405000298954360