Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3419 140 2e-28 seq4487 136 3e-27 seq11832 131 1e-25 seq7548 131 1e-25 seq1727 131 1e-25 seq8674 127 1e-24 seq6808 127 1e-24 seq4276 127 1e-24 seq4069 127 1e-24 seq6885 122 6e-23 seq3672 122 6e-23 seq3395 122 6e-23 seq5784 118 7e-22 seq3501 100 2e-16 seq10522 96.9 2e-15 seq5279 96.9 2e-15 seq3516 96.9 2e-15 seq5058 93.3 3e-14 seq3389 93.3 3e-14 seq2991 93.3 3e-14 seq12079 84.2 1e-11 seq4612 84.2 1e-11 >seq3419 Length=773737 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||| | |||| ||||| ||| |||||| |||||||||||||| | Sbjct 377557 TACCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTG 377616 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||||| || |||||||| | | ||| ||||| | | Sbjct 377617 CAAGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTG 377676 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| ||| ||| || ||||| | | || || |||||||| Sbjct 377677 GAATACCTTCCTTGTCCTGAATCTTTGCTTTGACATTGTCAATTGTGTCAGAACTTTCAA 377736 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| ||||| ||||||||||| |||| |||||||||||| ||||||||| Sbjct 377737 CTTCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCATG 377786 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | ||| || | ||||||||| ||||| |||||| ||||| ||||||| Sbjct 376872 CATT-CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAAT 376930 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| || | | || || || || || || ||||| || || | ||||| || | Sbjct 376931 CAGCTAAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTG 376990 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| ||||| ||||| ||| ||||| | | |||||| ||||| Sbjct 376991 GTGGAATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTT 377050 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || || || || || || | || ||||| || |||||||| Sbjct 377051 CAACTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 >seq4487 Length=1029 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 426 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGACAGGGACAGTGGGAATCTCGT 367 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 366 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 332 >seq11832 Length=2111 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1462 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1403 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1402 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1368 >seq7548 Length=1510 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 840 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 781 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 780 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 746 >seq1727 Length=11058 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 2848 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2907 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2908 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2942 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 4843 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 4902 Query 20007 G-GTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 4903 GACCCGTATTTAGCCTT 4919 >seq8674 Length=1641 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| || |||||| |||| || |||||||| Sbjct 976 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAAAGTAGACAGGGACAGTGGGAATCTCGT 917 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 916 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 882 >seq6808 Length=1426 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 418 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 359 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||| ||||||| Sbjct 358 TAATCCATTCATGCGCGTCACTAATTATATGACGA 324 >seq4276 Length=951 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 488 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 429 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||| ||||||| Sbjct 428 TAATCCATTCATGCGCGTCACTAATTATATGACGA 394 >seq4069 Length=902 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 388 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 329 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||| ||||||| Sbjct 328 TAATCCATTCATGCGCGTCACTAATTAAATGACGA 294 >seq6885 Length=1435 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || ||||| ||| |||| || |||||||| Sbjct 946 AAGCCCGTTCCCTTGGCTGTGGTTTCTCTGGATAGAAGACAGGGACAGTGGGAATCTCGT 887 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 886 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 852 >seq3672 Length=621 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||| | |||| || |||||||| Sbjct 400 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAAACAGGGACAGTGGGAATCTCGT 341 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||| ||||||| Sbjct 340 TAATCCATTCATGCGCGTCACTAATTAAATGACGA 306 >seq3395 Length=1051719 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||| ||||||| |||||||||||| |||| || |||||||| Sbjct 287197 AAGCCCGTTCCCTTGGCTATGGTTTCACTAGATAGTAGACAGGGACAGTGGGAATCTCGT 287138 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||||||||||| Sbjct 287137 TAATCCATTCATCCGCGTCACTAATTAGATGACGA 287103 >seq5784 Length=1289 Score = 118 bits (130), Expect = 7e-22 Identities = 84/95 (88%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||| | |||| || |||||||| Sbjct 801 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTATACAGGGACAGTGGGAATCTCGT 742 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||| ||||||| Sbjct 741 TAATCCATTCATGCGCGTCACTAATTA-ATGACGA 708 >seq3501 Length=2764102 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||| |||||||||||||| ||||| || ||||||||| |||| | |||||| | Sbjct 522327 AAGCCTGTTCCCTTGGCTGTAGTTTCACTGGATAGTAGACAGGGACAGTAGGAATCTCAT 522386 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| ||||||||||||||||| |||| Sbjct 522387 TAATCCATTCATACGCGTCACTAATTAGATTACGA 522421 >seq10522 Length=1887 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 564 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 505 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 504 GCCCGTATTTAGCCTT 489 >seq5279 Length=1201 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 67 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 126 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 127 GCCCGTATTTAGCCTT 142 >seq3516 Length=6239366 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 2423472 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 2423413 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 2423412 GCCCGTATTTAGCCTT 2423397 Score = 82.4 bits (90), Expect = 5e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| |||| || |||||||| |||||||||||| |||||| |||| | Sbjct 2671590 CTCTCTTTTCAAAGTCCTTT-CATCTTTCCCTTCCGGTACTTGTTCACTATCGATCTCTC 2671532 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 2671531 GCCCATATTTAGCCTTA 2671515 >seq5058 Length=1160 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 5/74 (7%) Strand=Plus/Minus Query 25923 GTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCAC 25977 |||||||| ||||||||| |||| || |||||||||||||| |||||||||||||| Sbjct 1160 GTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 1101 Query 25978 TAATTAGATGACGA 25991 |||||||||||||| Sbjct 1100 TAATTAGATGACGA 1087 >seq3389 Length=699234 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| || ||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 252429 CTCTCTTTTTAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 252370 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 252369 GCCCGTATTTAGCCTT 252354 >seq2991 Length=32481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| || | || | ||| || || |||||| || ||||| ||||| | Sbjct 26343 CCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCG 26284 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || ||||| || || || || || || || | ||| Sbjct 26283 AGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 26224 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||||||||| | || ||||| || || Sbjct 26223 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTACC 26164 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || || || |||||||||||||| || ||||| |||||||| ||| Sbjct 26163 TCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATCTTT 26113 >seq12079 Length=2168 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||| |||| | ||||||||||||||||||||| | Sbjct 662 CTCTCTTTTCAAAGTTCTTTTCATCTTTTCCTCGCATTACTTGTTCGCTATCGGTCTCTC 603 Query 20007 GGTAATATTTAGCCTT 20022 | ||| ||||||| Sbjct 602 GCCCGTATATAGCCTT 587 >seq4612 Length=1064 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 19957 AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTT 20016 ||||| ||||||| ||||||||| |||||||||||||||||||||||| || ||||| Sbjct 1 AAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATTT 60 Query 20017 AGCCTT 20022 |||||| Sbjct 61 AGCCTT 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334874684349884