Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3345 163 4e-35 seq3444 107 2e-18 >seq3345 Length=549657 Score = 163 bits (180), Expect = 4e-35 Identities = 396/591 (67%), Gaps = 13/591 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || ||| ||||| ||||| || || || ||||||| ||| | |||||||| | Sbjct 163816 ACAGCAGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGA 163875 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | ||||| || ||||| || || |||||||| ||||| || || | |||| || || || Sbjct 163876 AGGTGAGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCG-CGCAGAAGGAACCC 163934 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCG 32828 || ||||| |||||||| || || ||||| | || | ||| || | | | | Sbjct 163935 GAGAAGAAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGCAAAGGTCTCCGAG 163994 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| | ||||||||||||||||||| || ||||| || ||||| Sbjct 163995 CCGTCG---ATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCA 164051 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 | || |||||||| | || || | || |||| || || || | | ||| Sbjct 164052 ACGGCGCGAAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGA 164111 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||| || || || || || || || || ||||| || || |||||| | |||| Sbjct 164112 CTGTACATCTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCC 164171 Query 33009 TCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 || | | ||| || || | ||| || || || | ||| ||| || ||||| || Sbjct 164172 TCAGCCACCTGAACATCAG-ACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATC 164230 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG-- 33124 ||| || ||||| || | || || | || || | |||||| | || | || Sbjct 164231 GGAGGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGT 164290 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 || | ||| || |||||| | || | || || || || | ||||| || || || Sbjct 164291 ATTCTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGC 164350 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 ||| ||||| || ||||| | |||||| || |||| ||||| ||||| || Sbjct 164351 CTCCGCCTTCTTGTACATTTCCCAGATCTCTGGATACTGAATCGGAAACAT 164401 >seq3444 Length=1312069 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | |||||||||||| ||||| |||||| || ||| | | || | Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| | |||| | || || ||||| | |||||||| || ||||| | ||| | | Sbjct 1026679 TACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCGACTCTCATCAGC 1026738 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 |||||||| || |||||||| | ||| | | || || | |||||| | || | Sbjct 1026739 ATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1026798 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || |||||||| | || ||| || || || ||||| || Sbjct 1026799 GTTTTGAATCCAAAATAATCATAGTCAAAATCCCGATCATAAATGAT 1026845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633491302014400