Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3419 129 5e-25 seq17702 114 1e-20 seq3482 96.9 3e-15 seq3318 96.9 3e-15 >seq3419 Length=773737 Score = 129 bits (142), Expect = 5e-25 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||||||||| | |||||| | ||||| || ||| Sbjct 377785 ATGCAGATTTTCGTGAAAACCCTGACCGGTAAAACTATCACATTGGAAGTTGAAAGTTCT 377726 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||||||| | ||| ||||| ||||| |||||||| || Sbjct 377725 GACACAATTGA--CAATGTCAAAGCAAAGATTCAG-GACAAGGAAGGTATTCCACCAGAT 377669 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| |||||||| | ||||||| ||||||| | | |||||| Sbjct 377668 CAGCAAAGGTTGATATTTGCTGGCAAACAGCTTGAAGATGGTCGCACTCTTGCAGATTAC 377609 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 |||||||| || || ||||| || || Sbjct 377608 AATATTCAGAAGGAGTCCACCCTTCA 377583 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | ||||| | ||||| || || Sbjct 377102 ATGCAGATTTTTGTGAAGACTCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGTTCA 377043 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| |||||| ||||| |||||||||||||| |||| Sbjct 377042 GATACCATTGA--CAATGTCAAGACTAAAATCCAAGACAAGGAAGGGATTCCACCAGACC 376985 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | |||||||| || || || || || |||| | || | | ||||||| Sbjct 376984 AACAGAGGCTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGAGGACCTTAGCTGATTACA 376925 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || || || || || ||||| ||||| Sbjct 376924 ACATTCAGAAGGAGTCAACTCTCCATTTGGTGCT 376891 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || ||||| ||| Sbjct 381297 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTGGAAAGTTCT 381238 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || | ||| ||||||| ||||| || || || ||||| ||||| Sbjct 381237 GACACCATTGA-TAACGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCACCCGACCA 381179 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || |||| |||| | || ||| || ||||| Sbjct 381178 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAGGATGGGAGGACCTTGGCAGACTACAA 381119 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 |||||||| ||||| || || || Sbjct 381118 CATTCAAAAGGAATCAACTCTGCA 381095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| |||||||| ||||| || || | || || || || |||| |||| || ||| Sbjct 378018 AACAGATGCAAATCTTTGTGAAAACACTTACTGGCAAGACCGTCACCCTCGAGGTTGAGA 377959 Query 25054 CGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 ||||||||||| || |||| | || || | ||| || || || || || || Sbjct 377958 GCTCTGACACTATTGATAATGTCA---AGGCTAAGATTCA-GGATAAGGAGGGAATCCCT 377903 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || ||||| ||| | | |||||||| |||||||| | || |||| |||||| ||| Sbjct 377902 CCAGACCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAGGATGGCCGCACTCTGGCT 377843 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || || || || || || || || Sbjct 377842 GACTACAACATCCAAAAGGAGTCAACCCTCCACTTGGTTCT 377802 >seq17702 Length=19512 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || || ||| ||| Sbjct 10553 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCT 10612 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || | ||| | || | ||| ||||||||||| || || ||||||| Sbjct 10613 GACACCATTGA-TAACGTCAAGGCGAAGATTCAG-GACAAAGAAGGCATCCCTCCTGACC 10670 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||| || |||||||| || | || |||| |||||| | | ||||||| Sbjct 10671 AGCAGAGGCTTATATTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTTGCTGATTACA 10730 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || ||||| ||||| || || | || || | || ||||| || Sbjct 10731 ACATACAGAAAGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGAGGTGG 10779 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| ||| | ||||| || ||||||| | || || ||| ||| Sbjct 10325 ATGCAGATCTTTGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCT 10384 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| | || | || | ||| | || | ||| ||||||||||| || || ||||||| Sbjct 10385 GACACCGTTGA-TAACGTCAAGGCGAAGATTCAG-GACAAAGAAGGCATCCCTCCTGACC 10442 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||| || |||||||| || | || |||| ||| || | | ||||||| Sbjct 10443 AGCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTTGCTGATTACA 10502 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || ||||| ||||| || || | || || | || ||||| || Sbjct 10503 ACATACAGAAAGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGAGGTGG 10551 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| ||||||| | || || ||| ||| Sbjct 10781 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACTCTGGAGGTTGAGAGTTCT 10840 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| |||||| || || ||||| || || ||||| | Sbjct 10841 GACACAATAGA--CAATGTAAAGACGAAAATCCAGGATAAGGAAGGCATCCCTCCTGATC 10898 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | ||||||||||| ||||| | || |||| |||||| | | || || | Sbjct 10899 AACAGAGGCTCATTTTTGCCGGGAAACAGCTTGAGGATGGTCGCACCTTAGCTGACTATA 10958 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || ||||| || || || || ||||| || Sbjct 10959 ACATACAGAAAGAGTCAACCCTCCACTTAGTTCT 10992 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || |||| || | || || ||| || Sbjct 10097 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAGACCATAACTCTGGAGGTCGAGAGTTCA 10156 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| ||| ||| || || |||||||| || ||||||||| Sbjct 10157 GACACTATTGACAACGTGAAAGCAAAGATCCAAGATAAGGAAGGGATACCTCCTGACCAA 10216 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | ||||| | | || |||||| Sbjct 10217 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCCTTGCTGACTACAAT 10276 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || ||| | || || Sbjct 10277 ATTCAGAAGGAATCCACTCTCCATCTGGTTCT 10308 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| ||| Sbjct 11009 ATGCAGATTTTTGTGAAGACCCTAACTGGAAAGACCATCACTCTGGAGGTAGAGAGCTCT 11068 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| || ||| || || |||||||| ||||| |||||| Sbjct 11069 GATACCATTGACAATGTGAAGGCGAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAA 11128 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || | || |||| | || ||| ||||| || Sbjct 11129 CAACGTTTGATCTTTGCAGGTAAGCAGCTGGAGGATGGCAGGACCCTGGCGGATTATAAC 11188 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || || | ||||| Sbjct 11189 ATCCAGAAAGAATCCACCCTTCACCTCGTGCT 11220 >seq3482 Length=2130385 Score = 96.9 bits (106), Expect = 3e-15 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| |||||||||||| || | || ||||| || |||||||| ||| Sbjct 21881 GACAAGGAAGGAATTCCTCCTGACCAACAGAGGTTGATATTTGCTGGGAAACAATTGGAA 21940 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| || | | |||||||| ||||| || || || || || ||| | || || Sbjct 21941 GATGGTCGAACACTTGCAGATTACAACATTCAGAACGAGTCTACTCTCCATCTTGT-CTT 21999 Query 25212 AGGCTAAGAGGAG 25224 ||| ||||||| Sbjct 22000 GAGCTCAGAGGAG 22012 >seq3318 Length=237370 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || || ||||| | ||||| || ||||||| | || |||||| Sbjct 45468 AACAGATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAGA 45527 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| | ||| || ||| |||||||||||||| ||||| | Sbjct 45528 GCAGCGACACCATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGGATCCCACCGG 45587 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||||| | || || ||||| ||||| | ||||| | || || | | ||||| Sbjct 45588 ACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGATT 45647 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 |||| || ||||| ||||| || || || Sbjct 45648 ACAACATCCAAAAGGAATCGACTCTCCA 45675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433234185029660