Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3345 161 1e-34 seq3452 91.5 2e-13 seq3513 89.7 6e-13 seq3486 89.7 6e-13 seq3505 87.8 2e-12 seq3311 87.8 2e-12 seq3409 86.0 7e-12 seq3394 86.0 7e-12 seq3412 82.4 8e-11 >seq3345 Length=549657 Score = 161 bits (178), Expect = 1e-34 Identities = 391/584 (67%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 ||||| |||||| ||| | |||||||||||||| || | ||| ||| ||| || | | Sbjct 163824 CACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGA 163883 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaa 93210 || || | ||| || || || || ||||| || || | ||| || ||| || || || Sbjct 163884 CCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCG-CGCAGAAGGAACCCGAGAAGAA 163942 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| || || || ||||| | ||| |||||||| | | || | | Sbjct 163943 GATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGCAAAGGTCTCCGA---GCCGTC 163999 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| || |||||||||||| || || | ||||| | || || | ||| Sbjct 164000 GATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACGGCGCG 164059 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| || | ||| |||| ||| || ||||| || |||| | ||| ||||| Sbjct 164060 AAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGACTGTACAT 164119 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || |||| |||||| ||||| |||||||| || ||||| | ||| || | | Sbjct 164120 CTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCCTCAGCCAC 164179 Query 93451 CTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| || || || | || | ||||||| ||| || || |||||||| || | Sbjct 164180 CTGAACATC-AGACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATCGGAGGCGG 164238 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAG--CTTATCCC 93566 | ||||| || | | || | || || || || || || |||||| || |||| Sbjct 164239 CGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATTCTCCC 164298 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | ||| | ||| | || || || || || ||| | ||||| ||||| || || || | Sbjct 164299 AGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTCCGCCT 164358 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 | |||||||| ||||| || ||| |||| ||||| ||||| ||| Sbjct 164359 TCTTGTACATTTCCCAGATCTCTGGATACTGAATCGGAAACATG 164402 >seq3452 Length=1200804 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 1156831 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCG 1156772 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1156771 TGGGTTCAAATCCCACTTCTGACA 1156748 >seq3513 Length=3706331 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1015652 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1015595 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 |||||| || |||||| ||| | |||| ||||| | |||||| Sbjct 1015594 GGGTTCAAATCCCACAGCTGTC-AATTTTTATTTTATTTTTTG 1015553 >seq3486 Length=2184632 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1660437 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 1660380 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 1660379 GCGTGGGTTCAAATCCCACTTCTGACAATTT 1660349 >seq3505 Length=2969368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 618995 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 618938 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 || ||||||| || ||||| |||||| |||| | | |||||| Sbjct 618937 GCCTGGGTTCAAATCCCACTTCTGACATTTTATCAGTTTAATTTT 618893 >seq3311 Length=290665 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 134673 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGC 134614 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 134613 GTGGGTTCAAATCCCACTTCTGACA 134589 >seq3409 Length=702230 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 464540 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 464481 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 464480 TGGGTTCAAATCCCACTTCTGACA 464457 >seq3394 Length=1003388 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 238383 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 238440 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 238441 GCGTGGGTTCAAATCCCACTTCTGACA 238467 >seq3412 Length=755790 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 692108 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 692165 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || | |||| Sbjct 692166 TTCAAATCCCACAGCTGTCATAATATT 692192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556737149059360