Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq3419 89.7 4e-13 >seq3419 Length=773737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || || || | || || |||||||| || ||||| || Sbjct 381525 ATGCAAATTTTCGTTAAGACTCTTACTGGGAAAACCATCACTTTGGAAGTTGAGAGTTCT 381466 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || || |||||| ||||| || || | || || ||| Sbjct 381465 GATACTATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAA 381406 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||||| || | ||| || || || | || ||| | ||| | || || |||||| Sbjct 381405 CAAAGGCTCATATTTGCTGGTAAGCAGCTTGAGGATGGAAGAACCCTTGCAGACTATAAT 381346 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| ||||||||||| || || ||| | ||||| || ||||||| Sbjct 381345 ATCCAAAAGGAATCTACACTCCACTTGGTGCTCCGTCTTCGTGGTGGCA 381297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422948412368800