Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3495 93.3 9e-14 seq3487 93.3 9e-14 seq2488 93.3 9e-14 seq3515 91.5 3e-13 seq3498 87.8 4e-12 seq3480 87.8 4e-12 seq3457 84.2 4e-11 seq3432 84.2 4e-11 >seq3495 Length=2510181 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1211548 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1211489 Query 142563 CCCCAC 142568 |||||| Sbjct 1211488 CCCCAC 1211483 >seq3487 Length=2134545 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 757113 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 757172 Query 142563 CCCCAC 142568 |||||| Sbjct 757173 CCCCAC 757178 >seq2488 Length=21341 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4418 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4477 Query 142563 CCCCAC 142568 |||||| Sbjct 4478 CCCCAC 4483 >seq3515 Length=5419773 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4995487 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4995546 Query 142564 CCCAC 142568 ||||| Sbjct 4995547 CCCAC 4995551 >seq3498 Length=2744760 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 932065 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 932006 Query 142563 CCCCAC 142568 |||||| Sbjct 932005 CCCCAC 932000 >seq3480 Length=1794408 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 982260 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 982319 Query 142563 CCCCAC 142568 |||||| Sbjct 982320 CCCCAC 982325 >seq3457 Length=1294296 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 325211 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 325152 Query 142563 CCCCAC 142568 |||||| Sbjct 325151 CCCCAC 325146 >seq3432 Length=933051 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||| ||||||||||||| Sbjct 373931 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGATCGTGGGTTCGAG 373872 Query 142563 CCCCAC 142568 |||||| Sbjct 373871 CCCCAC 373866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027602863059524