Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq17702 118 9e-22 seq3318 113 4e-20 seq3419 100 2e-16 seq2991 95.1 1e-14 >seq17702 Length=19512 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | |||||| ||| || || || || || Sbjct 10521 GTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCG 10462 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| ||||| |||||||||||||| |||||| || Sbjct 10461 GCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTG 10402 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||||||||| | | || || || | || | || |||||||| |||||| Sbjct 10401 ACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTT 10342 Query 114366 TTTACAAAAATCTGCATG 114383 |||||||| ||||||||| Sbjct 10341 TTTACAAAGATCTGCATG 10324 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | || ||| ||| || || || || || Sbjct 10749 GTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCGAGCTGCTTGCCG 10690 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||| ||||| ||||| |||||||||||||| |||||| || Sbjct 10689 GCGAATATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTG 10630 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | || | || |||||||| || || Sbjct 10629 ACGTTATCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTC 10570 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 10569 TTGACAAAGATCTGCAT 10553 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || ||||| || ||||| ||||| || | || || || || Sbjct 10306 AACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGTCCGTCCTC 10247 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || ||| |||| |||||||||||||| ||||| || ||||| || || Sbjct 10246 CAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGTATCCCTTCCTTATCTTG 10187 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| ||| | | |||| ||||| | ||||| |||| || | || || Sbjct 10186 GATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGACCTCCAGAGTTATGGTCTT 10127 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| |||||||| || || || ||||| Sbjct 10126 GCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 >seq3318 Length=237370 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | || | || ||||| ||||| |||||||||||| Sbjct 45702 ATCCCACCACGGAGGCGGAGAACAAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCG 45643 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||| || ||||| || ||| |||| |||||||| |||||||| Sbjct 45642 GCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGT 45583 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | || | ||||||| || || Sbjct 45582 GGGATCCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCC 45523 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||| || || || || || |||||||| Sbjct 45522 ACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 45473 >seq3419 Length=773737 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||| |||||||| | ||| ||| ||||||||| ||||| ||| Sbjct 377589 GTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGACCATCTTCAAGCTGTTTGCCA 377648 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | || || || || ||||| ||||| ||||| ||||||| ||| Sbjct 377649 GCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCCTTGTCCTGAATCTTTGCTTTG 377708 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | ||| || |||| || | ||||| |||||||| ||| Sbjct 377709 ACATTGTCAATTGTGTCAGAACTTTCAACTTCCAATGTGATAGTTTTACCGGTCAGGGTT 377768 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 377769 TTCACGAAAATCTGCATG 377786 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| | || || |||| || || ||||| || |||||||| || Sbjct 381524 ATACCACCACGGAGTCGAAGCACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCA 381583 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||||||||| |||||||| | || | | ||||||||||| Sbjct 381584 GCAAGAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGT 381643 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || || || ||||| ||| ||| | ||| | | |||| ||| || | ||| Sbjct 381644 GGGATTCCCTCCTTGTCTTGAAT-TTTGGCCTTAACATTATCAATGGTATCAGAACTTTC 381702 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | || || || || ||||| || |||||||| ||||| Sbjct 381703 AAATTCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| | || | || ||||| | || || || || |||||||||||||| Sbjct 376873 ATTCCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCA 376932 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || | ||| || | || |||||||| | || || | ||||||||| || Sbjct 376933 GCTAAG-GTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGG 376991 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATT 114330 ||||| ||||| ||||| || ||| || || | | |||| ||| || | || Sbjct 376992 TGGAATCCCTTCCTTGTCTTGGAT-TTTAGTCTTGACATTGTCAATGGTATCTGAACTTT 377050 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| ||| | || || || || ||||| || |||||||||||||| Sbjct 377051 CAACTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 >seq2991 Length=32481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || || || || || || |||||| | |||||| ||| || Sbjct 26326 AACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCGAGGGTACGACCATCCTC 26267 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || ||||| ||| ||||||||||||| |||||||| |||||||| || ||||| Sbjct 26266 AAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 26207 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | || | ||| || | ||| || || || | ||| | || || Sbjct 26206 GATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTACCTCTAGGGTTATGGTCTT 26147 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || || || |||||||| Sbjct 26146 ACCCGTCAAGGTCTTGACGAAGATCTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420043441427568