Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3345 205 2e-47 >seq3345 Length=549657 Score = 205 bits (226), Expect = 2e-47 Identities = 568/864 (66%), Gaps = 33/864 (4%) Strand=Plus/Minus Query 42297 GACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGAC 42356 || |||||| ||||||||||||||| || || |||||| ||||||||| ||||| Sbjct 164380 GAGATCTGGGAAATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGGTTGAC 164321 Query 42357 CTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-----ACGAAAAGTTTTTCC 42411 || || |||| | || ||||||| | | || | | ||||| ||| Sbjct 164320 CTCTCCCAGGATATCCGCGACTGGGAG--AATACCTTAAACGACGACGAACGCCACTTCA 164263 Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 ||| || | || || || ||||||||||| || || || || |||||| || || Sbjct 164262 TCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAATTGTACTTGAGAATCTCGCTT 164203 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | | |||||| || || ||| |||||| || |||||| || ||||| || | Sbjct 164202 CTCGTTTCATGTCTGATGTTCAGGTGGCTGAGGCTCGTGCCTTCTATGGGTTCCAAATCG 164143 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATC 42591 | || ||||| | ||||| ||| ||||| ||| ||| | || ||||| ||| Sbjct 164142 CAATCGAGAATATCCACTCCGAGATGTACAGTCTACTTCTCGAGACTTACATTAAGGAC- 164084 Query 42592 CCGTCGAGCGTAACGGG----CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 ||||||| | || || || ||| | ||||| || || ||| | ||| Sbjct 164083 ---TCGAGCGAGAAGGATCATCTCTTTCGCGCCGTTGAGACCATCCCTTGCGTGGCCAAG 164027 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707 ||||| || ||||| || ||||||||| | | || || || | |||| | || Sbjct 164026 AAGGCCGATTGGGCTCTACGCTGGATCGACGGCTCGGAG---ACCTTTGCCGAGCGTCTC 163970 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| | ||||| || |||||||||||||| ||||| | | || |||||| Sbjct 163969 GTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTTCTGCGCGATTTTCTGG 163910 Query 42768 CTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || || || | ||| |||||| || ||||||||||| ||||| ||||| | || Sbjct 163909 CTGAAAAAGCGCG-GTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTCATTTCACGAGA 163851 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||| ||||| ||| | ||||| || || || |||| | | | ||| | | || Sbjct 163850 CGAAGGGCTTCATTGCGACTTCGCGTGTCTGCTGTAC---GGATTATTGAGGAATAGGCT 163794 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA----GT 42942 | ||||| || |||| || | | ||| |||||||| ||||||| ||| || Sbjct 163793 GAGTGAAGAGCGTGTGCGGGGGATTGTGAGGGATGCCGTGGATATCGAGAGGGAATTTGT 163734 Query 42943 TCCTCACGCAGTCGC-TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 | |||| || | ||| ||| |||||||||||||| || |||||| | || Sbjct 163733 TTGCGACGCGCTCCCTTGCGCGT-----TGGTCGGCATGAACGGGGATCTCATGAGTCAG 163679 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 |||||| ||| ||| || || | || ||| | |||| | | | || ||| Sbjct 163678 TACATCGAGTTCGTAGCAGATCGGCTGCTGGGTGCTCTGGGACATGGTAAGATGTATAAC 163619 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | | || || || | |||||| || ||||| |||| ||||||||||||||| Sbjct 163618 GTGGCTAATCCATTTGATTGGATGGAGCTGATTTCGTTACAGGGTAAGACCAACTTTTTC 163559 Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| || | ||| |||||| Sbjct 163558 GAGAAGCGAGTAGGCGAGTACCAG 163535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944129509480640